CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83439	Canola	cytosol	81.28	81.28
CDY17882	Canola	cytosol, mitochondrion, nucleus	63.08	64.23
AT2G44130.1	Thale cress	cytosol	66.41	63.33
CDX79780	Canola	cytosol	64.87	60.53
CDY41196	Canola	nucleus	56.67	55.25
CDX71859	Canola	cytosol	55.9	54.23
VIT_05s0094g01590.t01	Wine grape	cytosol	32.82	35.07
Zm00001d049016_P001	Maize	cytosol	33.08	34.68
TraesCS4B01G087600.1	Wheat	cytosol	32.56	34.51
TraesCS4A01G228600.1	Wheat	cytosol	32.31	34.24
Zm00001d007274_P001	Maize	cytosol	32.56	34.05
HORVU4Hr1G014970.1	Barley	cytosol	31.79	33.6
TraesCS4B01G087800.1	Wheat	cytosol	31.79	33.51
TraesCS4A01G228800.1	Wheat	cytosol	31.79	33.51
TraesCS4D01G084900.1	Wheat	cytosol	31.54	33.24
EES09544	Sorghum	cytosol	32.56	33.16
PGSC0003DMT400060940	Potato	cytosol	28.97	32.94
Solyc10g080610.1.1	Tomato	cytosol	28.72	32.56
EES08254	Sorghum	cytosol	31.79	32.46
KRH58914	Soybean	extracellular, plasma membrane	30.77	31.17
Os11t0246200-00	Rice	cytosol	30.51	31.07
TraesCS4D01G085000.1	Wheat	plastid	32.31	30.96
Zm00001d050815_P001	Maize	nucleus	29.23	30.56
GSMUA_Achr6P06940_001	Banana	cytosol	28.72	30.27
OQU85159	Sorghum	cytosol	29.49	29.95
Os02t0563000-00	Rice	cytosol	28.97	28.9
CDY69686	Canola	cytosol	25.9	28.29
CDY58028	Canola	cytosol	25.64	27.93
CDY53309	Canola	cytosol	25.64	27.93
CDX87309	Canola	cytosol	25.64	27.86
CDY36579	Canola	cytosol	25.38	27.65
CDY39979	Canola	cytosol	25.38	27.58
GSMUA_Achr6P28790_001	Banana	cytosol	9.23	21.82

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:9.2.1.1.2	EnsemblPlants:CDX95589	ProteinID:CDX95589	ProteinID:CDX95589.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00101451001
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PANTHER:PTHR24414	PANTHER:PTHR24414:SF34	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI0004EE7476	SEG:seg	:	:	:	:

Description

BnaC03g24700D

Coordinates

chrLK031890:+:116783..118102

Molecular Weight (calculated)

43458.5 Da

IEP (calculated)

7.561

GRAVY (calculated)

-0.428

Length

390 amino acids

Sequence
(BLAST)

001: MIMDKSSNRA EEVSKDLIPG LPSELAMECL VRVPYQFQSA MRSVCRSWRS LLSDSSFIKE RRRCGKAELL LCLVQPLSPP TLPVVEEEKS EKRVSGTPRF
101: GLSVYNATMS TWNRVAFPQQ QIPLFCECVA VQDAGKILLI GGWDPETLQP VKDVYVLEGS GRRWRRGAPM KESRSFFACA SVGSTKVYVA GGHDEQKNAL
201: RSAEVYDVEK DEWSTIAWMA EGRDECQGLG MGTGVGFCVL SGYATESQGR FRQDGEVYDP MTKSWSRIEN AWPFPDTSPR GRTVVDTRGS SRLCCFSTDR
301: ELQSQRQWES RDGSRKWNLD VEVTQLPTSG SSVYVGSSGG ESVVMIGGRR ETKGLLMKTT TEKNAGKWSH VDDIPFGFST LPFSHASIYV

Best Arabidopsis Sequence Match ( AT2G44130.1 )
(BLAST)

001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV

Arabidopsis Description

F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.