Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra035183.1-P | Field mustard | cytosol | 99.16 | 99.16 |
CDY39979 | Canola | cytosol | 94.99 | 94.99 |
AT1G80440.1 | Thale cress | cytosol | 80.78 | 81.92 |
CDY36579 | Canola | cytosol | 63.79 | 63.97 |
CDY58028 | Canola | cytosol | 62.95 | 63.13 |
CDY53309 | Canola | cytosol | 62.67 | 62.85 |
CDY69686 | Canola | cytosol | 61.84 | 62.18 |
VIT_09s0002g08870.t01 | Wine grape | cytosol | 17.55 | 55.26 |
GSMUA_AchrUn_... | Banana | mitochondrion | 10.59 | 51.35 |
Solyc03g120320.1.1 | Tomato | cytosol | 48.75 | 49.3 |
KRH47516 | Soybean | cytosol | 48.47 | 49.15 |
PGSC0003DMT400006584 | Potato | cytosol | 48.19 | 48.73 |
VIT_09s0002g05080.t01 | Wine grape | cytosol | 47.63 | 48.17 |
KRH23494 | Soybean | cytosol | 47.08 | 47.21 |
PGSC0003DMT400042651 | Potato | cytosol | 47.35 | 46.96 |
PGSC0003DMT400042652 | Potato | cytosol | 47.08 | 46.69 |
VIT_09s0002g05010.t01 | Wine grape | cytosol, peroxisome, plastid | 39.55 | 46.56 |
KRH44388 | Soybean | cytosol | 45.4 | 46.18 |
Solyc06g066770.1.1 | Tomato | cytosol | 46.8 | 45.78 |
Solyc03g120330.1.1 | Tomato | cytosol | 45.13 | 44.88 |
PGSC0003DMT400006583 | Potato | cytosol | 44.85 | 44.72 |
VIT_09s0002g08860.t01 | Wine grape | cytosol | 43.18 | 44.54 |
PGSC0003DMT400042650 | Potato | cytosol | 46.52 | 44.18 |
VIT_09s0002g04930.t01 | Wine grape | cytosol | 18.38 | 42.86 |
VIT_09s0002g08880.t01 | Wine grape | cytosol | 34.82 | 40.58 |
KRH09825 | Soybean | cytosol | 43.18 | 40.47 |
Os02t0208700-00 | Rice | cytosol | 32.59 | 38.11 |
EER88591 | Sorghum | cytosol | 39.28 | 36.62 |
VIT_09s0002g05210.t01 | Wine grape | cytosol | 13.65 | 36.57 |
Zm00001d036925_P001 | Maize | cytosol | 39.0 | 36.55 |
TraesCS6A01G178900.1 | Wheat | cytosol | 37.6 | 36.29 |
TraesCS6B01G206300.1 | Wheat | cytosol | 37.6 | 36.29 |
Os06t0594400-02 | Rice | cytosol | 38.16 | 35.96 |
TraesCS6D01G165600.1 | Wheat | cytosol | 35.38 | 35.77 |
EES06499 | Sorghum | cytosol | 35.93 | 34.58 |
TraesCS7D01G352400.1 | Wheat | cytosol | 36.77 | 34.29 |
TraesCS7B01G257400.1 | Wheat | cytosol | 36.21 | 33.77 |
CDX83439 | Canola | cytosol | 28.69 | 26.41 |
CDX95589 | Canola | cytosol | 27.86 | 25.64 |
CDY41196 | Canola | nucleus | 27.3 | 24.5 |
CDY17882 | Canola | cytosol, mitochondrion, nucleus | 25.91 | 24.28 |
CDX79780 | Canola | cytosol | 28.13 | 24.16 |
CDX71859 | Canola | cytosol | 27.02 | 24.13 |
Protein Annotations
EnsemblPlants:CDX87309 | EnsemblPlantsGene:GSBRNA2T00146274001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:F-box-like_dom_sf | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF93 |
PFAM:PF01344 | PFAM:PF13964 | ProteinID:CDX87309 | ProteinID:CDX87309.1 | SMART:SM00612 | SUPFAM:SSF117281 |
SUPFAM:SSF81383 | UniParc:UPI0004EE22F1 | MapMan:9.2.1.1.2 | : | : | : |
Description
BnaA07g35640D
Coordinates
chrLK031850:+:116716..118071
Molecular Weight (calculated)
39327.6 Da
IEP (calculated)
4.984
GRAVY (calculated)
-0.107
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MELIPNLPYD VARECLLRSS YKQFPVMASV CRGWNREVSL SEFFQQRKAS GHSQELLIMS QARVDTDREP GSGKNSASPE YRVAVLESGS GLWTELPPIL
101: GQPNGLPLFC KLVSIGSDLI VLGGLDPVTW QASDSVFVFS FLNSKWRAGA VMPGVKRSFF GCASDSDRTV LVAGGHDDEK QALTSAIVYD LAEDKWTFFP
201: DMSRERDECK AIFHAGKFHV IGGYATEEQG QFSKSAESFD VSTWQWGPVK EEFLDGGETV SAPIYATTGE NGDLYACWRG DVMVLRNDTW LKVGQIPADV
301: YSVAYVAVRP GKLTVIGNGK ALAGYGGATV GYICDLSSFR WVKLETHVGH VQAGCFLEV
101: GQPNGLPLFC KLVSIGSDLI VLGGLDPVTW QASDSVFVFS FLNSKWRAGA VMPGVKRSFF GCASDSDRTV LVAGGHDDEK QALTSAIVYD LAEDKWTFFP
201: DMSRERDECK AIFHAGKFHV IGGYATEEQG QFSKSAESFD VSTWQWGPVK EEFLDGGETV SAPIYATTGE NGDLYACWRG DVMVLRNDTW LKVGQIPADV
301: YSVAYVAVRP GKLTVIGNGK ALAGYGGATV GYICDLSSFR WVKLETHVGH VQAGCFLEV
001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
Arabidopsis Description
F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.