Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026753.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY69686 | Canola | cytosol | 93.58 | 93.84 |
| CDY58028 | Canola | cytosol | 85.2 | 85.2 |
| CDY36579 | Canola | cytosol | 84.64 | 84.64 |
| AT1G15670.1 | Thale cress | cytosol | 79.89 | 79.67 |
| CDX87309 | Canola | cytosol | 62.85 | 62.67 |
| CDY39979 | Canola | cytosol | 62.85 | 62.67 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 11.73 | 56.76 |
| VIT_09s0002g08870.t01 | Wine grape | cytosol | 17.04 | 53.51 |
| KRH47516 | Soybean | cytosol | 48.32 | 48.87 |
| Solyc03g120320.1.1 | Tomato | cytosol | 47.49 | 47.89 |
| PGSC0003DMT400006584 | Potato | cytosol | 47.49 | 47.89 |
| VIT_09s0002g05080.t01 | Wine grape | cytosol | 47.49 | 47.89 |
| KRH44388 | Soybean | cytosol | 46.93 | 47.59 |
| KRH23494 | Soybean | cytosol | 47.21 | 47.21 |
| VIT_09s0002g08860.t01 | Wine grape | cytosol | 45.81 | 47.13 |
| VIT_09s0002g05010.t01 | Wine grape | cytosol, peroxisome, plastid | 39.94 | 46.89 |
| PGSC0003DMT400042651 | Potato | cytosol | 47.21 | 46.69 |
| PGSC0003DMT400042652 | Potato | cytosol | 47.21 | 46.69 |
| Solyc03g120330.1.1 | Tomato | cytosol | 46.65 | 46.26 |
| PGSC0003DMT400006583 | Potato | cytosol | 46.09 | 45.83 |
| Solyc06g066770.1.1 | Tomato | cytosol | 46.37 | 45.23 |
| PGSC0003DMT400042650 | Potato | cytosol | 46.65 | 44.18 |
| VIT_09s0002g08880.t01 | Wine grape | cytosol | 37.71 | 43.83 |
| VIT_09s0002g04930.t01 | Wine grape | cytosol | 17.88 | 41.56 |
| KRH09825 | Soybean | cytosol | 43.58 | 40.73 |
| Os02t0208700-00 | Rice | cytosol | 32.96 | 38.44 |
| Os06t0594400-02 | Rice | cytosol | 40.22 | 37.8 |
| TraesCS6A01G178900.1 | Wheat | cytosol | 38.83 | 37.37 |
| TraesCS6B01G206300.1 | Wheat | cytosol | 38.27 | 36.83 |
| Zm00001d036925_P001 | Maize | cytosol | 39.11 | 36.55 |
| EER88591 | Sorghum | cytosol | 38.83 | 36.1 |
| TraesCS7D01G352400.1 | Wheat | cytosol | 38.83 | 36.1 |
| TraesCS6D01G165600.1 | Wheat | cytosol | 35.75 | 36.06 |
| TraesCS7B01G257400.1 | Wheat | cytosol | 38.55 | 35.84 |
| VIT_09s0002g05210.t01 | Wine grape | cytosol | 13.13 | 35.07 |
| EES06499 | Sorghum | cytosol | 35.75 | 34.32 |
| CDX83439 | Canola | cytosol | 29.33 | 26.92 |
| CDX95589 | Canola | cytosol | 27.93 | 25.64 |
| CDX71859 | Canola | cytosol | 27.65 | 24.63 |
| CDY41196 | Canola | nucleus | 27.37 | 24.5 |
| CDY17882 | Canola | cytosol, mitochondrion, nucleus | 25.14 | 23.5 |
| CDX79780 | Canola | cytosol | 26.82 | 22.97 |
Protein Annotations
| EnsemblPlants:CDY53309 | EnsemblPlantsGene:GSBRNA2T00010422001 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF93 | PFAM:PF01344 |
| ProteinID:CDY53309 | ProteinID:CDY53309.1 | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI0002542CB7 | UniProt:A0A078IV69 |
| MapMan:9.2.1.1.2 | : | : | : | : | : |
Description
BnaA09g56660DBnaA09g56660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV69]
Coordinates
chrLK033186:+:42107..43414
Molecular Weight (calculated)
39607.1 Da
IEP (calculated)
6.107
GRAVY (calculated)
-0.200
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MELIPDLLET LARECLLRTS YKQFPLISSV CKVWKREISL PDFLRHRKAS GHSQELVVLS QARLDPVSQL GSGKTIPTPV YRISILEPES GLWTELPPVP
101: GKSNGLPLFC RLASVGTDLV VIGGLDPVTW GTSDSVFIFS FLTSTWRNGR SMPGGPRSFF ACASDSERNV LVAGGHDEDK NALTSAIMYD VAEDRWALLP
201: DMGRERDECA ATFHAGKFHV IGGYATEEQG QFSKTAESFD VTMRQWGQEA KDFLAHGMST WPPVCAAAEN GELYACCLRD LTVKSDDTWQ KVVNLPDGVC
301: NVSYMAVRRS GKVVVIGSAR YGEPSVGYNW DMSNSRWVKL ETHEKYKGHV QAGCFLEI
101: GKSNGLPLFC RLASVGTDLV VIGGLDPVTW GTSDSVFIFS FLTSTWRNGR SMPGGPRSFF ACASDSERNV LVAGGHDEDK NALTSAIMYD VAEDRWALLP
201: DMGRERDECA ATFHAGKFHV IGGYATEEQG QFSKTAESFD VTMRQWGQEA KDFLAHGMST WPPVCAAAEN GELYACCLRD LTVKSDDTWQ KVVNLPDGVC
301: NVSYMAVRRS GKVVVIGSAR YGEPSVGYNW DMSNSRWVKL ETHEKYKGHV QAGCFLEI
001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI
Arabidopsis Description
F-box/kelch-repeat protein At1g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.