Factsheet for VIT_09s0002g08880.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g01510.t01
VIT_11s0016g01520.t01
VIT_11s0016g01640.t01
VIT_11s0016g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	VIT_11s0016g01510.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01510.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g08870.t01	Wine grape	cytosol	27.27	73.68
VIT_09s0002g08860.t01	Wine grape	cytosol	71.43	63.22
GSMUA_AchrUn_...	Banana	mitochondrion	11.69	48.65
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	48.05	48.52
VIT_09s0002g05080.t01	Wine grape	cytosol	52.27	45.35
Solyc03g120320.1.1	Tomato	cytosol	51.95	45.07
PGSC0003DMT400006584	Potato	cytosol	51.3	44.51
KRH23494	Soybean	cytosol	49.68	42.74
KRH47516	Soybean	cytosol	46.75	40.68
KRH44388	Soybean	cytosol	45.78	39.94
Bra026753.1-P	Field mustard	cytosol	43.83	37.71
CDY53309	Canola	cytosol	43.83	37.71
KRH09825	Soybean	cytosol	46.75	37.6
CDY69686	Canola	cytosol	43.18	37.25
CDY58028	Canola	cytosol	42.86	36.87
CDY36579	Canola	cytosol	42.53	36.59
Bra026116.1-P	Field mustard	cytosol	42.53	36.59
AT1G80440.1	Thale cress	cytosol	41.56	36.16
Os02t0208700-00	Rice	cytosol	35.06	35.18
Bra035183.1-P	Field mustard	cytosol	40.91	35.1
EES06499	Sorghum	cytosol	42.21	34.85
AT1G15670.1	Thale cress	cytosol	40.58	34.82
CDX87309	Canola	cytosol	40.58	34.82
CDY39979	Canola	cytosol	40.26	34.54
TraesCS6B01G206300.1	Wheat	cytosol	41.56	34.41
TraesCS6A01G178900.1	Wheat	cytosol	41.23	34.14
Zm00001d036925_P001	Maize	cytosol	42.21	33.94
TraesCS6D01G165600.1	Wheat	cytosol	38.96	33.8
TraesCS7B01G257400.1	Wheat	cytosol	42.21	33.77
EER88591	Sorghum	cytosol	41.88	33.51
TraesCS7D01G352400.1	Wheat	cytosol	41.56	33.25
VIT_09s0002g04930.t01	Wine grape	cytosol	16.56	33.12
Os06t0594400-02	Rice	cytosol	40.91	33.07
VIT_09s0002g05210.t01	Wine grape	cytosol	13.96	32.09
VIT_08s0007g07120.t01	Wine grape	cytosol	33.44	30.03
VIT_05s0094g01590.t01	Wine grape	cytosol	24.35	20.55

Protein Annotations

EntrezGene:100242448	wikigene:100242448	Gene3D:2.120.10.80	MapMan:9.2.1.1.2	ProteinID:CCB59705	ProteinID:CCB59705.1
InterPro:F-box-like_dom_sf	UniProt:F6HXS4	EMBL:FN596494	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162
GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
EntrezGene:LOC100242448	wikigene:LOC100242448	PFAM:PF13964	PANTHER:PTHR24413	PANTHER:PTHR24413:SF93	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000198409A	ArrayExpress:VIT_09s0002g08880	EnsemblPlantsGene:VIT_09s0002g08880	EnsemblPlants:VIT_09s0002g08880.t01
RefSeq:XP_002271537	RefSeq:XP_002271537.1	:	:	:	:

Description

No Description!

Coordinates

chr9:+:10354324..10355250

Molecular Weight (calculated)

34203.0 Da

IEP (calculated)

5.904

GRAVY (calculated)

-0.098

Length

308 amino acids

Sequence
(BLAST)

001: MEQLIQGLPD DIALECLIRL PYNHLSTASL VSPPWKLHLQ LPLFLRHRKT AGFTTNVIVM AQSPPQTNTG KAIPLANSYR LTLFDPDSGS WSELPSLPGM
101: NRGLPLYCGL VGVGSDLVVI GGYDLETWKS LNAVFIYNVV SATWRRGANI PGVRRSFFGC VSDSDRMVLV AGGHDGDKNA LRSSLAYDVA KDEWLPLPDM
201: SMERDGCKVV FQHEKFHVIG GYRTKTLGRF ERSAEAFDVA SWQWEHIKED LLETSTCSRT CVVGDDGKLY MCREGDLVPW FKVAVLVIDS KGPEAYWSQC
301: IGLVSDDT

Best Arabidopsis Sequence Match ( AT1G80440.1 )
(BLAST)

001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV

Arabidopsis Description

F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.