Factsheet for VIT_08s0007g07120.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080610.1.1	Tomato	cytosol	65.89	65.7
PGSC0003DMT400060940	Potato	cytosol	65.01	65.01
VIT_09s0002g08870.t01	Wine grape	cytosol	13.99	42.11
VIT_09s0002g08860.t01	Wine grape	cytosol	34.99	34.48
VIT_09s0002g08880.t01	Wine grape	cytosol	30.03	33.44
VIT_09s0002g05080.t01	Wine grape	cytosol	34.11	32.96
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	28.57	32.13
VIT_09s0002g04930.t01	Wine grape	cytosol	12.83	28.57
VIT_05s0094g01590.t01	Wine grape	cytosol	30.03	28.22
VIT_09s0002g05210.t01	Wine grape	cytosol	9.91	25.37

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100262356	wikigene:100262356	Gene3D:2.120.10.80	MapMan:9.2.1.1.2	EMBL:AM487859
ProteinID:CAN71047	ProteinID:CAN71047.1	ProteinID:CCB55213	ProteinID:CCB55213.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
UniProt:F6HLF2	EMBL:FN595991	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031463
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100262356	wikigene:LOC100262356
PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24412	PANTHER:PTHR24412:SF383	SMART:SM00256	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00015CA599	ArrayExpress:VIT_08s0007g07120	EnsemblPlantsGene:VIT_08s0007g07120	EnsemblPlants:VIT_08s0007g07120.t01
unigene:Vvi.15637	RefSeq:XP_002281267	RefSeq:XP_002281267.2	:	:	:

Description

No Description!

Coordinates

chr8:+:20749964..20751183

Molecular Weight (calculated)

38035.7 Da

IEP (calculated)

4.788

GRAVY (calculated)

-0.334

Length

343 amino acids

Sequence
(BLAST)

001: MAQFTELIPG LPEEIALECF TRLPYTSHRV AAQVCRRWGE LLQGKEFYYL RKQTGFTHKA ACLVQALPVL SESDGRKPVR PPSYGISVFD SVSRTWERIA
101: PVPKYPDGLP LFCQVTSSEG KLVVMGGWDP ESYDPVKDVF VYDFTTRRWK QGRDMPSKRS FFAAGELEGR IFVAGGHDDS KNALSTAWVY DVRRDEWSEL
201: TRMSDERDEC QGVVIGSEFW VVSGYGTESQ GGFVKSAESL DLETGRWSRV DEAWGTNQCP RSCVGVGKDG KLFSWAESDT AVGVGACAVD LGDWTLLTGS
301: AYQGAPQGFF LVERKEGQNG KLERIEVGDG FSGFVQSGCC VEI

Best Arabidopsis Sequence Match ( AT2G44130.1 )
(BLAST)

001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV

Arabidopsis Description

F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.