Factsheet for VIT_09s0002g08860.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g01510.t01
VIT_11s0016g01520.t01
VIT_11s0016g01640.t01
VIT_11s0016g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	VIT_11s0016g01510.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01510.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g08870.t01	Wine grape	cytosol	31.9	97.37
VIT_09s0002g08880.t01	Wine grape	cytosol	63.22	71.43
Solyc03g120320.1.1	Tomato	cytosol	58.62	57.46
PGSC0003DMT400006584	Potato	cytosol	57.76	56.62
VIT_09s0002g05080.t01	Wine grape	cytosol	56.03	54.93
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	47.99	54.75
VIT_09s0002g04930.t01	Wine grape	cytosol	23.56	53.25
VIT_09s0002g05210.t01	Wine grape	cytosol	19.83	51.49
GSMUA_AchrUn_...	Banana	mitochondrion	10.63	50.0
KRH23494	Soybean	cytosol	50.29	48.88
KRH44388	Soybean	cytosol	48.56	47.88
KRH47516	Soybean	cytosol	48.56	47.74
CDY53309	Canola	cytosol	47.13	45.81
Bra026753.1-P	Field mustard	cytosol	47.13	45.81
CDY36579	Canola	cytosol	46.84	45.53
Bra026116.1-P	Field mustard	cytosol	46.84	45.53
CDY69686	Canola	cytosol	46.55	45.38
CDY58028	Canola	cytosol	46.55	45.25
AT1G80440.1	Thale cress	cytosol	44.83	44.07
AT1G15670.1	Thale cress	cytosol	45.4	44.01
CDY39979	Canola	cytosol	44.83	43.45
KRH09825	Soybean	cytosol	47.7	43.34
CDX87309	Canola	cytosol	44.54	43.18
Bra035183.1-P	Field mustard	cytosol	44.54	43.18
Os02t0208700-00	Rice	cytosol	36.21	41.04
EES06499	Sorghum	cytosol	41.09	38.34
Zm00001d036925_P001	Maize	cytosol	41.95	38.12
EER88591	Sorghum	cytosol	41.67	37.66
TraesCS6A01G178900.1	Wheat	cytosol	39.94	37.37
TraesCS6B01G206300.1	Wheat	cytosol	39.66	37.1
Os06t0594400-02	Rice	cytosol	40.23	36.75
TraesCS7B01G257400.1	Wheat	cytosol	40.52	36.62
TraesCS7D01G352400.1	Wheat	cytosol	40.52	36.62
TraesCS6D01G165600.1	Wheat	cytosol	37.36	36.62
VIT_08s0007g07120.t01	Wine grape	cytosol	34.48	34.99
VIT_05s0094g01590.t01	Wine grape	cytosol	25.29	24.11

Protein Annotations

EntrezGene:100247580	wikigene:100247580	EntrezGene:100257826	wikigene:100257826	Gene3D:2.120.10.80	MapMan:9.2.1.1.2
ProteinID:CBI36470	ProteinID:CBI36470.3	UniProt:D7TZF6	InterPro:F-box-like_dom_sf	EMBL:FN596494	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005
GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100247580	wikigene:LOC100247580	EntrezGene:LOC100257826	wikigene:LOC100257826
PFAM:PF01344	PANTHER:PTHR24413	PANTHER:PTHR24413:SF93	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI0001984099	ArrayExpress:VIT_09s0002g08860	EnsemblPlantsGene:VIT_09s0002g08860	EnsemblPlants:VIT_09s0002g08860.t01	RefSeq:XP_002271433	RefSeq:XP_002271433.1
RefSeq:XP_003632845	RefSeq:XP_003632845.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:+:10322798..10323844

Molecular Weight (calculated)

38554.0 Da

IEP (calculated)

5.213

GRAVY (calculated)

-0.208

Length

348 amino acids

Sequence
(BLAST)

001: MEQLIPGLPD DIALECLIRL PYNHLSTASL VCPPWKLHLR HPDFLRHRKA AGFTTNIIVM AQSPPQTNTG KAIPPADSYG LTLYEPDSGS WSELPPLPGM
101: NRGLPMHCGL VGVGLDLVVI GGYDPETWES SNAVFVYNVV SATWRRGADI PGVRRSFFGC SSDSDRMVLV AGGHDDDKNA LRSALAYDVA EDDWLPVPDM
201: SMERDECKVV FQRGKFHVIG GYQTETQGRF QRSAEAFDVA SWQWDPVNED LLETTTHPRT CVVGDDGKMY MCRGRDLVEK QGATWQPIAK LPAELCSGFY
301: LTIWRGKLLL SGTPQKAYTL DIGSRTWTEL VVPAKYCGLV QSSCCLEI

Best Arabidopsis Sequence Match ( AT1G15670.1 )
(BLAST)

001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI

Arabidopsis Description

F-box/kelch-repeat protein At1g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.