Factsheet for VIT_09s0002g05210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g01510.t01
VIT_11s0016g01520.t01
VIT_11s0016g01640.t01
VIT_11s0016g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	VIT_11s0016g01510.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01510.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g04930.t01	Wine grape	cytosol	84.33	73.38
VIT_09s0002g05080.t01	Wine grape	cytosol	85.07	32.11
VIT_09s0002g08870.t01	Wine grape	cytosol	25.37	29.82
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	55.97	24.59
KRH23494	Soybean	cytosol	58.21	21.79
VIT_09s0002g08860.t01	Wine grape	cytosol	51.49	19.83
KRH47516	Soybean	cytosol	50.0	18.93
KRH44388	Soybean	cytosol	47.76	18.13
Solyc03g120320.1.1	Tomato	cytosol	47.76	18.03
PGSC0003DMT400006584	Potato	cytosol	47.01	17.75
Os02t0208700-00	Rice	cytosol	37.31	16.29
KRH09825	Soybean	cytosol	43.28	15.14
AT1G80440.1	Thale cress	cytosol	39.55	14.97
VIT_09s0002g08880.t01	Wine grape	cytosol	32.09	13.96
CDY39979	Canola	cytosol	37.31	13.93
Bra035183.1-P	Field mustard	cytosol	36.57	13.65
CDX87309	Canola	cytosol	36.57	13.65
TraesCS7B01G257400.1	Wheat	cytosol	38.06	13.25
EES06499	Sorghum	cytosol	36.57	13.14
Bra026753.1-P	Field mustard	cytosol	35.07	13.13
Bra026116.1-P	Field mustard	cytosol	35.07	13.13
CDY36579	Canola	cytosol	35.07	13.13
CDY53309	Canola	cytosol	35.07	13.13
TraesCS7D01G352400.1	Wheat	cytosol	37.31	12.99
CDY58028	Canola	cytosol	34.33	12.85
AT1G15670.1	Thale cress	cytosol	34.33	12.81
Os06t0594400-02	Rice	cytosol	35.82	12.6
EER88591	Sorghum	cytosol	35.07	12.21
CDY69686	Canola	cytosol	32.09	12.04
TraesCS6B01G206300.1	Wheat	cytosol	32.84	11.83
TraesCS6A01G178900.1	Wheat	cytosol	32.09	11.56
Zm00001d036925_P001	Maize	cytosol	32.84	11.49
TraesCS6D01G165600.1	Wheat	cytosol	29.1	10.99
VIT_08s0007g07120.t01	Wine grape	cytosol	25.37	9.91
VIT_05s0094g01590.t01	Wine grape	cytosol	23.88	8.77
GSMUA_AchrUn_...	Banana	mitochondrion	4.48	8.11

Protein Annotations

ArrayExpress:VIT_09s0002g05210	EMBL:FN596494	EnsemblPlants:VIT_09s0002g05210.t01	EnsemblPlantsGene:VIT_09s0002g05210	EntrezGene:109123135	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24413	PANTHER:PTHR24413:SF93
ProteinID:CCB59517	ProteinID:CCB59517.1	RefSeq:XP_019077613.1	SUPFAM:SSF117281	UniParc:UPI000210A221	UniProt:F6HX47
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:4880212..4880670

Molecular Weight (calculated)

15147.9 Da

IEP (calculated)

4.589

GRAVY (calculated)

-0.336

Length

134 amino acids

Sequence
(BLAST)

001: MSSAGAARTE MQGRFERSAE AFDFANWEWD KAEEDFLEDS TCPRTCVDGG DMGMYMCHAG EAVALQDSRW QTVDKLLAEI RHTAYMTAWE GKLLVSIGEA
101: HVAYMLDLKS RRWRKLVAPE EFCGHVQSGC CLEI

Best Arabidopsis Sequence Match ( AT1G80440.1 )
(BLAST)

001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV

Arabidopsis Description

F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.