Factsheet for Bra026116.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003126.1-P
Bra005221.1-P
Bra006985.1-P
Bra017210.1-P
Bra039777.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	Bra005221.1-P	AT2G37040.1	21798944
AT1G15670.1	Bra017210.1-P	AT2G37040.1	21798944
AT1G15670.1	Bra003126.1-P	AT3G53260.1	21798944
AT1G15670.1	Bra006985.1-P	AT3G53260.1	21798944
AT1G15670.1	Bra039777.1-P	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36579	Canola	cytosol	100.0	100.0
Bra026753.1-P	Field mustard	cytosol	84.64	84.64
AT1G15670.1	Thale cress	cytosol	82.12	81.89
Bra035183.1-P	Field mustard	cytosol	64.8	64.62
GSMUA_AchrUn_...	Banana	mitochondrion	11.73	56.76
VIT_09s0002g08870.t01	Wine grape	cytosol	17.04	53.51
KRH47516	Soybean	cytosol	50.56	51.13
KRH44388	Soybean	cytosol	49.16	49.86
KRH23494	Soybean	cytosol	48.32	48.32
VIT_09s0002g05080.t01	Wine grape	cytosol	47.49	47.89
Solyc03g120320.1.1	Tomato	cytosol	47.21	47.61
PGSC0003DMT400006584	Potato	cytosol	46.93	47.32
PGSC0003DMT400042651	Potato	cytosol	47.49	46.96
PGSC0003DMT400042652	Potato	cytosol	47.49	46.96
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	39.94	46.89
VIT_09s0002g08860.t01	Wine grape	cytosol	45.53	46.84
Solyc03g120330.1.1	Tomato	cytosol	46.65	46.26
Solyc06g066770.1.1	Tomato	cytosol	47.21	46.05
PGSC0003DMT400006583	Potato	cytosol	45.81	45.56
PGSC0003DMT400042650	Potato	cytosol	46.93	44.44
VIT_09s0002g08880.t01	Wine grape	cytosol	36.59	42.53
KRH09825	Soybean	cytosol	44.69	41.78
VIT_09s0002g04930.t01	Wine grape	cytosol	17.88	41.56
Os06t0594400-02	Rice	cytosol	43.02	40.42
Os02t0208700-00	Rice	cytosol	32.96	38.44
TraesCS7D01G352400.1	Wheat	cytosol	40.5	37.66
Zm00001d036925_P001	Maize	cytosol	40.22	37.6
EER88591	Sorghum	cytosol	40.22	37.4
TraesCS6B01G206300.1	Wheat	cytosol	38.83	37.37
TraesCS6A01G178900.1	Wheat	cytosol	38.83	37.37
TraesCS7B01G257400.1	Wheat	cytosol	39.94	37.14
TraesCS6D01G165600.1	Wheat	cytosol	36.59	36.9
EES06499	Sorghum	cytosol	37.43	35.92
VIT_09s0002g05210.t01	Wine grape	cytosol	13.13	35.07
Bra000342.1-P	Field mustard	cytosol	28.77	25.69
Bra007494.1-P	Field mustard	nucleus	27.37	23.33
Bra004807.1-P	Field mustard	cytosol	27.93	23.31

Protein Annotations

EnsemblPlants:Bra026116.1	EnsemblPlants:Bra026116.1-P	EnsemblPlantsGene:Bra026116	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF93
PFAM:PF01344	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI000253F0B2	UniProt:M4EBF7	MapMan:9.2.1.1.2

Description

AT1G15670 (E=4e-172) | kelch repeat-containing F-box family protein

Coordinates

chrA06:+:6021670..6022746

Molecular Weight (calculated)

39245.8 Da

IEP (calculated)

6.256

GRAVY (calculated)

-0.131

Length

358 amino acids

Sequence
(BLAST)

001: MELIPDLPEP VARECLLRSS YQQFPLIASV SKLWRREISL PDFLRHRKAS GHSQELVVLS QARIKPVSEL GSGKTIPTPV YRISVLEPGS GLWTELPPVP
101: GKSNGLPLFC RLASVGTDLV VIGGLDPATW RTSDSVLIFS FLTSTWRNGT SMPGGPRSFF ACASDSERNV FVAGGHDEDK NALTSALVYD VAEDRWALLP
201: DMGRERDECK AIFHAGKVHV IGGYTTVEQG QFSKTAESLD VATRRWGAET KDFLAPGMTT WPPVCAAGGN GVLYACCRRD LMVMNGDTWQ KVGDLPADVC
301: NVSYVAVRRS GKLVVIGSAR YGEPSVVYIW DASDSRWEKL ETCEKYEGHV QAGCFLEI

Best Arabidopsis Sequence Match ( AT1G15670.1 )
(BLAST)

001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI

Arabidopsis Description

F-box/kelch-repeat protein At1g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.