Factsheet for VIT_09s0002g05080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g01510.t01
VIT_11s0016g01520.t01
VIT_11s0016g01640.t01
VIT_11s0016g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	VIT_11s0016g01510.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01510.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	83.66	97.38
VIT_09s0002g04930.t01	Wine grape	cytosol	40.85	94.16
VIT_09s0002g05210.t01	Wine grape	cytosol	32.11	85.07
VIT_09s0002g08870.t01	Wine grape	cytosol	20.28	63.16
Solyc03g120320.1.1	Tomato	cytosol	58.03	58.03
PGSC0003DMT400006584	Potato	cytosol	57.75	57.75
VIT_09s0002g08860.t01	Wine grape	cytosol	54.93	56.03
GSMUA_AchrUn_...	Banana	mitochondrion	11.55	55.41
KRH47516	Soybean	cytosol	55.21	55.37
KRH23494	Soybean	cytosol	55.49	55.03
KRH44388	Soybean	cytosol	54.37	54.67
VIT_09s0002g08880.t01	Wine grape	cytosol	45.35	52.27
AT1G80440.1	Thale cress	cytosol	49.01	49.15
CDY39979	Canola	cytosol	49.01	48.47
Bra035183.1-P	Field mustard	cytosol	48.73	48.19
CDX87309	Canola	cytosol	48.17	47.63
KRH09825	Soybean	cytosol	51.27	47.52
CDY53309	Canola	cytosol	47.89	47.49
Bra026753.1-P	Field mustard	cytosol	47.89	47.49
Bra026116.1-P	Field mustard	cytosol	47.89	47.49
CDY36579	Canola	cytosol	47.89	47.49
CDY58028	Canola	cytosol	47.61	47.21
AT1G15670.1	Thale cress	cytosol	47.32	46.8
CDY69686	Canola	cytosol	47.04	46.78
Os02t0208700-00	Rice	cytosol	38.31	44.3
TraesCS7B01G257400.1	Wheat	cytosol	47.61	43.9
TraesCS7D01G352400.1	Wheat	cytosol	47.32	43.64
EES06499	Sorghum	cytosol	45.63	43.43
Os06t0594400-02	Rice	cytosol	46.48	43.31
Zm00001d036925_P001	Maize	cytosol	46.2	42.82
EER88591	Sorghum	cytosol	45.92	42.34
TraesCS6A01G178900.1	Wheat	cytosol	43.94	41.94
TraesCS6B01G206300.1	Wheat	cytosol	43.38	41.4
TraesCS6D01G165600.1	Wheat	cytosol	40.85	40.85
VIT_08s0007g07120.t01	Wine grape	cytosol	32.96	34.11
VIT_05s0094g01590.t01	Wine grape	cytosol	25.92	25.21

Protein Annotations

EntrezGene:100241136	wikigene:100241136	EntrezGene:100241253	wikigene:100241253	Gene3D:2.120.10.80	MapMan:9.2.1.1.2
EMBL:AM425089	EMBL:AM470589	ProteinID:CAN68948	ProteinID:CAN68948.1	ProteinID:CAN70525	ProteinID:CAN70525.1
ProteinID:CCB59507	ProteinID:CCB59507.1	InterPro:F-box-like_dom_sf	UniProt:F6HX37	EMBL:FN596494	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005
GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100241136	wikigene:LOC100241136	EntrezGene:LOC100241253	wikigene:LOC100241253
PFAM:PF01344	PANTHER:PTHR24413	PANTHER:PTHR24413:SF93	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI00015C8DB3	ArrayExpress:VIT_09s0002g05080	EnsemblPlantsGene:VIT_09s0002g05080	EnsemblPlants:VIT_09s0002g05080.t01	unigene:Vvi.22379	RefSeq:XP_002280331
RefSeq:XP_002280331.2	RefSeq:XP_002284872	RefSeq:XP_002284872.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:4726371..4727752

Molecular Weight (calculated)

39795.3 Da

IEP (calculated)

5.046

GRAVY (calculated)

-0.213

Length

355 amino acids

Sequence
(BLAST)

001: MDFIPGLPDD VARQCLIRVS YENFSTIAAV CRVWKSEVED PDFFRQRKTA GYTRPVFAMA QARVVPNRSS GGMKCPTLAY RVTLLDLETG NWSELPPVPG
101: FSDGLPMFCQ LVGVESELVV VGGWDPDTWE ISSSVFIYNF LSATWRRGAD MPGARRSFFG CAASGLERVV YVAGGHDGEK NALKSALVYD VAKDEWAPLP
201: DMARERDECK GVFHRGKFHV IGGYCTEMQG RFERSAEAFD FANWEWDKAE EDFLESSTCP RTCVDGGDMG MYMCHAGEVV ALQDSRWQTV DKLPAEIRHT
301: AYMTTWEGKL LVMGCRSFGD AHVAYMLDLK SHRWRKLVAA EEFCGHVQSG CCLEI

Best Arabidopsis Sequence Match ( AT1G80440.1 )
(BLAST)

001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV

Arabidopsis Description

F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.