Factsheet for VIT_09s0002g08870.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g01510.t01
VIT_11s0016g01520.t01
VIT_11s0016g01640.t01
VIT_11s0016g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	VIT_11s0016g01510.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01510.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion	24.56	37.84
VIT_09s0002g08860.t01	Wine grape	cytosol	97.37	31.9
VIT_09s0002g04930.t01	Wine grape	cytosol	41.23	30.52
VIT_09s0002g08880.t01	Wine grape	cytosol	73.68	27.27
VIT_09s0002g05210.t01	Wine grape	cytosol	29.82	25.37
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	57.89	21.64
VIT_09s0002g05080.t01	Wine grape	cytosol	63.16	20.28
Solyc03g120320.1.1	Tomato	cytosol	63.16	20.28
Os02t0208700-00	Rice	cytosol	53.51	19.87
PGSC0003DMT400006584	Potato	cytosol	61.4	19.72
KRH23494	Soybean	cytosol	61.4	19.55
KRH09825	Soybean	cytosol	64.04	19.06
KRH47516	Soybean	cytosol	58.77	18.93
KRH44388	Soybean	cytosol	57.02	18.41
AT1G80440.1	Thale cress	cytosol	56.14	18.08
CDX87309	Canola	cytosol	55.26	17.55
AT1G15670.1	Thale cress	cytosol	54.39	17.27
Bra035183.1-P	Field mustard	cytosol	54.39	17.27
CDY53309	Canola	cytosol	53.51	17.04
Bra026116.1-P	Field mustard	cytosol	53.51	17.04
Bra026753.1-P	Field mustard	cytosol	53.51	17.04
CDY36579	Canola	cytosol	53.51	17.04
CDY39979	Canola	cytosol	53.51	16.99
CDY69686	Canola	cytosol	52.63	16.81
CDY58028	Canola	cytosol	52.63	16.76
TraesCS7B01G257400.1	Wheat	cytosol	53.51	15.84
EES06499	Sorghum	cytosol	51.75	15.82
TraesCS7D01G352400.1	Wheat	cytosol	52.63	15.58
Zm00001d036925_P001	Maize	cytosol	51.75	15.4
TraesCS6B01G206300.1	Wheat	cytosol	50.0	15.32
Os06t0594400-02	Rice	cytosol	50.88	15.22
EER88591	Sorghum	cytosol	50.88	15.06
TraesCS6A01G178900.1	Wheat	cytosol	49.12	15.05
VIT_08s0007g07120.t01	Wine grape	cytosol	42.11	13.99
TraesCS6D01G165600.1	Wheat	cytosol	42.11	13.52
VIT_05s0094g01590.t01	Wine grape	cytosol	37.72	11.78

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	ProteinID:CCB59704	ProteinID:CCB59704.1	UniProt:F6HXS3	EMBL:FN596494
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2	PFAM:PF01344	PFAM:PF07646
PANTHER:PTHR24413	PANTHER:PTHR24413:SF93	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI000210A232	ArrayExpress:VIT_09s0002g08870
EnsemblPlantsGene:VIT_09s0002g08870	EnsemblPlants:VIT_09s0002g08870.t01	:	:	:	:

Description

No Description!

Coordinates

chr9:+:10350167..10350663

Molecular Weight (calculated)

12888.0 Da

IEP (calculated)

4.188

GRAVY (calculated)

-0.547

Length

114 amino acids

Sequence
(BLAST)

001: MVLVAGGHDD DKNALRSALA YDVAEDDWLP VPDMSMERDE CKVVFQRGKF HVIGGYETET QGRFQRSAEA FDVASWQWDP VNEDLLETTT HPRTCVVGDD
101: GKMYMCRGSD LVEQ

Best Arabidopsis Sequence Match ( AT1G15670.1 )
(BLAST)

001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI

Arabidopsis Description

F-box/kelch-repeat protein At1g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.