Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035183.1-P | Field mustard | cytosol | 82.49 | 81.34 |
| CDX87309 | Canola | cytosol | 81.92 | 80.78 |
| CDY39979 | Canola | cytosol | 80.51 | 79.39 |
| AT1G15670.1 | Thale cress | cytosol | 68.36 | 67.41 |
| VIT_09s0002g08870.t01 | Wine grape | cytosol | 18.08 | 56.14 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 11.3 | 54.05 |
| KRH47516 | Soybean | cytosol | 50.28 | 50.28 |
| VIT_09s0002g05080.t01 | Wine grape | cytosol | 49.15 | 49.01 |
| KRH44388 | Soybean | cytosol | 48.31 | 48.44 |
| PGSC0003DMT400042651 | Potato | cytosol | 49.44 | 48.34 |
| VIT_09s0002g05010.t01 | Wine grape | cytosol, peroxisome, plastid | 41.53 | 48.2 |
| Solyc03g120320.1.1 | Tomato | cytosol | 48.02 | 47.89 |
| KRH23494 | Soybean | cytosol | 48.31 | 47.77 |
| PGSC0003DMT400006584 | Potato | cytosol | 47.74 | 47.61 |
| PGSC0003DMT400042652 | Potato | cytosol | 48.31 | 47.24 |
| Solyc06g066770.1.1 | Tomato | cytosol | 48.31 | 46.59 |
| Solyc03g120330.1.1 | Tomato | cytosol | 47.18 | 46.26 |
| VIT_09s0002g04930.t01 | Wine grape | cytosol | 20.06 | 46.1 |
| PGSC0003DMT400006583 | Potato | cytosol | 45.76 | 45.0 |
| VIT_09s0002g08860.t01 | Wine grape | cytosol | 44.07 | 44.83 |
| PGSC0003DMT400042650 | Potato | cytosol | 47.74 | 44.71 |
| VIT_09s0002g08880.t01 | Wine grape | cytosol | 36.16 | 41.56 |
| KRH09825 | Soybean | cytosol | 44.35 | 40.99 |
| VIT_09s0002g05210.t01 | Wine grape | cytosol | 14.97 | 39.55 |
| Os02t0208700-00 | Rice | cytosol | 34.18 | 39.41 |
| TraesCS6A01G178900.1 | Wheat | cytosol | 39.83 | 37.9 |
| TraesCS6B01G206300.1 | Wheat | cytosol | 39.55 | 37.63 |
| Zm00001d036925_P001 | Maize | cytosol | 40.4 | 37.34 |
| Os06t0594400-02 | Rice | cytosol | 40.11 | 37.27 |
| EER88591 | Sorghum | cytosol | 40.4 | 37.14 |
| TraesCS6D01G165600.1 | Wheat | cytosol | 37.01 | 36.9 |
| EES06499 | Sorghum | cytosol | 38.7 | 36.73 |
| TraesCS7D01G352400.1 | Wheat | cytosol | 38.98 | 35.84 |
| TraesCS7B01G257400.1 | Wheat | cytosol | 38.42 | 35.32 |
| AT2G44130.1 | Thale cress | cytosol | 29.66 | 25.67 |
| AT3G59940.1 | Thale cress | cytosol | 29.94 | 25.36 |
Protein Annotations
| Gene3D:2.120.10.80 | EntrezGene:844383 | MapMan:9.2.1.1.2 | ProteinID:AAF27130.1 | ProteinID:AEE36405.1 | ArrayExpress:AT1G80440 |
| EnsemblPlantsGene:AT1G80440 | RefSeq:AT1G80440 | TAIR:AT1G80440 | RefSeq:AT1G80440-TAIR-G | EnsemblPlants:AT1G80440.1 | TAIR:AT1G80440.1 |
| EMBL:AY065227 | EMBL:AY087214 | EMBL:AY117221 | InterPro:F-box-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009719 | GO:GO:0009987 | GO:GO:0019005 | GO:GO:0019538 | GO:GO:0019748 | GO:GO:0030162 |
| GO:GO:0031625 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0080037 | GO:GO:2000762 | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_565238.1 | PFAM:PF01344 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020003 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR24413 |
| PANTHER:PTHR24413:SF93 | UniProt:Q9M8L2 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI00000A403A |
Description
F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
Coordinates
chr1:+:30241452..30243176
Molecular Weight (calculated)
38815.1 Da
IEP (calculated)
4.960
GRAVY (calculated)
-0.044
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.