Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g120320.1.1 | Tomato | cytosol | 95.49 | 95.49 |
| VIT_09s0002g08870.t01 | Wine grape | cytosol | 19.72 | 61.4 |
| VIT_09s0002g08860.t01 | Wine grape | cytosol | 56.62 | 57.76 |
| VIT_09s0002g05080.t01 | Wine grape | cytosol | 57.75 | 57.75 |
| VIT_09s0002g05010.t01 | Wine grape | cytosol, peroxisome, plastid | 48.73 | 56.72 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 10.99 | 52.7 |
| KRH23494 | Soybean | cytosol | 52.39 | 51.96 |
| VIT_09s0002g04930.t01 | Wine grape | cytosol | 22.54 | 51.95 |
| KRH47516 | Soybean | cytosol | 51.55 | 51.69 |
| PGSC0003DMT400042651 | Potato | cytosol | 52.68 | 51.66 |
| VIT_09s0002g08880.t01 | Wine grape | cytosol | 44.51 | 51.3 |
| KRH44388 | Soybean | cytosol | 50.7 | 50.99 |
| PGSC0003DMT400006583 | Potato | cytosol | 51.55 | 50.83 |
| PGSC0003DMT400042652 | Potato | cytosol | 51.27 | 50.28 |
| Bra035183.1-P | Field mustard | cytosol | 49.58 | 49.03 |
| PGSC0003DMT400042650 | Potato | cytosol | 51.55 | 48.41 |
| CDX87309 | Canola | cytosol | 48.73 | 48.19 |
| CDY39979 | Canola | cytosol | 48.45 | 47.91 |
| AT1G80440.1 | Thale cress | cytosol | 47.61 | 47.74 |
| Bra026753.1-P | Field mustard | cytosol | 47.89 | 47.49 |
| CDY53309 | Canola | cytosol | 47.89 | 47.49 |
| VIT_09s0002g05210.t01 | Wine grape | cytosol | 17.75 | 47.01 |
| CDY36579 | Canola | cytosol | 47.32 | 46.93 |
| Bra026116.1-P | Field mustard | cytosol | 47.32 | 46.93 |
| CDY69686 | Canola | cytosol | 47.04 | 46.78 |
| CDY58028 | Canola | cytosol | 47.04 | 46.65 |
| KRH09825 | Soybean | cytosol | 49.58 | 45.95 |
| AT1G15670.1 | Thale cress | cytosol | 45.35 | 44.85 |
| Os02t0208700-00 | Rice | cytosol | 35.77 | 41.37 |
| EER88591 | Sorghum | cytosol | 43.66 | 40.26 |
| Zm00001d036925_P001 | Maize | cytosol | 43.38 | 40.21 |
| Os06t0594400-02 | Rice | cytosol | 43.1 | 40.16 |
| EES06499 | Sorghum | cytosol | 41.69 | 39.68 |
| TraesCS6A01G178900.1 | Wheat | cytosol | 41.41 | 39.52 |
| TraesCS6B01G206300.1 | Wheat | cytosol | 41.13 | 39.25 |
| TraesCS7B01G257400.1 | Wheat | cytosol | 42.54 | 39.22 |
| TraesCS7D01G352400.1 | Wheat | cytosol | 42.25 | 38.96 |
| TraesCS6D01G165600.1 | Wheat | cytosol | 38.59 | 38.59 |
| PGSC0003DMT400060940 | Potato | cytosol | 34.37 | 35.57 |
Protein Annotations
| EntrezGene:102600996 | Gene3D:2.120.10.80 | MapMan:9.2.1.1.2 | InterPro:F-box-like_dom_sf | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | InterPro:Kelch_2 | UniProt:M0ZRN0 |
| PFAM:PF01344 | PFAM:PF07646 | PFAM:PF13964 | EnsemblPlantsGene:PGSC0003DMG400002562 | PGSC:PGSC0003DMG400002562 | EnsemblPlants:PGSC0003DMT400006584 |
| PANTHER:PTHR24413 | PANTHER:PTHR24413:SF93 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI000296F4D7 |
| RefSeq:XP_006343108.1 | SEG:seg | : | : | : | : |
Description
F-box/kelch-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002562]
Coordinates
chr3:-:59750380..59751653
Molecular Weight (calculated)
39927.6 Da
IEP (calculated)
5.442
GRAVY (calculated)
-0.179
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIIPTLPYD IGLECLIRVP YYNFSSVTSV SRNWKLQIEL PEFWRRRRAT GSTRQVILMA QARIDPRLKL GSFKYSAFSV YKLTLYEPES GYWAELPPVP
101: GISDGLPMFC QLVGVGLNLV VMGGWNPLTW EPSNAVFVFS FVSATWRRGA DMPGCRRSFF GCASDSERTV YVAGGHDEEK NALKSAMAYD VARDMWVPMP
201: DMASERDECK CTFFQDKFHV IGGYDTSMQG QFGTSAESFD PSTWQWDQVN EHFFESATCP RTCVEGGDGK LYLCRDGDVL ALGKSTWQAV AAIPVELRSV
301: AFVTAWRGKI LMTGSMGFNE PHNTYVLDLQ SYKWTKMDTP ANFSGHVQSG CCLEM
101: GISDGLPMFC QLVGVGLNLV VMGGWNPLTW EPSNAVFVFS FVSATWRRGA DMPGCRRSFF GCASDSERTV YVAGGHDEEK NALKSAMAYD VARDMWVPMP
201: DMASERDECK CTFFQDKFHV IGGYDTSMQG QFGTSAESFD PSTWQWDQVN EHFFESATCP RTCVEGGDGK LYLCRDGDVL ALGKSTWQAV AAIPVELRSV
301: AFVTAWRGKI LMTGSMGFNE PHNTYVLDLQ SYKWTKMDTP ANFSGHVQSG CCLEM
001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
Arabidopsis Description
F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.