Factsheet for PGSC0003DMT400042650

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400049886
PGSC0003DMT400055488
PGSC0003DMT400055489
PGSC0003DMT400055529
PGSC0003DMT400055531
PGSC0003DMT400080548
PGSC0003DMT400080765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	PGSC0003DMT400049886	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400055488	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400055489	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400055529	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400055531	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400080548	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400080765	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400049886	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400055488	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400055489	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400055529	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400055531	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400080548	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400080765	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042652	Potato	cytosol	93.12	97.24
PGSC0003DMT400042651	Potato	cytosol	92.33	96.41
Solyc06g066770.1.1	Tomato	cytosol	87.04	89.65
PGSC0003DMT400006583	Potato	cytosol	63.23	66.39
PGSC0003DMT400006584	Potato	cytosol	48.41	51.55
KRH47516	Soybean	cytosol	45.24	48.31
KRH23494	Soybean	cytosol	45.5	48.04
AT1G80440.1	Thale cress	cytosol	44.71	47.74
AT1G15670.1	Thale cress	cytosol	45.24	47.63
KRH44388	Soybean	cytosol	44.18	47.31
GSMUA_AchrUn_...	Banana	mitochondrion	9.26	47.3
CDY36579	Canola	cytosol	44.44	46.93
Bra026116.1-P	Field mustard	cytosol	44.44	46.93
CDY39979	Canola	cytosol	44.44	46.8
CDY58028	Canola	cytosol	44.18	46.65
CDY53309	Canola	cytosol	44.18	46.65
Bra026753.1-P	Field mustard	cytosol	44.18	46.65
CDX87309	Canola	cytosol	44.18	46.52
Bra035183.1-P	Field mustard	cytosol	44.18	46.52
CDY69686	Canola	cytosol	43.65	46.22
KRH09825	Soybean	cytosol	42.33	41.78
Os02t0208700-00	Rice	cytosol	31.75	39.09
TraesCS6A01G178900.1	Wheat	cytosol	36.77	37.37
TraesCS6B01G206300.1	Wheat	cytosol	36.51	37.1
Os06t0594400-02	Rice	cytosol	37.04	36.75
EER88591	Sorghum	cytosol	37.3	36.62
Zm00001d036925_P001	Maize	cytosol	37.04	36.55
TraesCS7B01G257400.1	Wheat	cytosol	37.04	36.36
TraesCS6D01G165600.1	Wheat	cytosol	34.13	36.34
TraesCS7D01G352400.1	Wheat	cytosol	36.51	35.84
EES06499	Sorghum	cytosol	34.92	35.39
PGSC0003DMT400060940	Potato	cytosol	30.69	33.82

Protein Annotations

EnsemblPlants:PGSC0003DMT400042650	EnsemblPlantsGene:PGSC0003DMG400016540	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF93
PFAM:PF01344	PGSC:PGSC0003DMG400016540	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000295E6E6
UniProt:M1BDE6	MapMan:9.2.1.1.2	:	:	:	:

Description

Kelch repeat-containing F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016540]

Coordinates

chr6:-:49430214..49431826

Molecular Weight (calculated)

42139.3 Da

IEP (calculated)

4.867

GRAVY (calculated)

-0.156

Length

378 amino acids

Sequence
(BLAST)

001: MDLIPGIPNE IALECLIRLP VDQFSKAASV CKKWNGEITL PEFRRRRKVS GLTRTVFAMV QSMVATVKKP EGDTALFSTQ VYRLSVCDPE NGSWYDLPPI
101: PELIDGLPRF CRIVGVGSDL VVIGGCDPDT WRVMDCVFVY NFISGSWRRG ADMPGQQRSF FGCASDSNRM IVVAGGHDDE KNAMKSALSY DVVKDEWITL
201: PDMVMERDEC KVVFHKGKFH VIGGYPTWAQ GHFENDAEVF DTATWQWQLE DDFLSVINTS PHSCIEGDDG KLYMCRGGDV AVKEDPTWRK LTRLPAGITS
301: VAYLTSCRGL PAGITSVAYL TACQGKLILV GRGQFDELYS IYALDLDVES DGKVKKWTKV ETSDEYSGHV QYGCCLEI

Best Arabidopsis Sequence Match ( AT1G15670.1 )
(BLAST)

001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI

Arabidopsis Description

F-box/kelch-repeat protein At1g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.