Factsheet for PGSC0003DMT400042651

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400049886
PGSC0003DMT400055488
PGSC0003DMT400055489
PGSC0003DMT400055529
PGSC0003DMT400055531
PGSC0003DMT400080548
PGSC0003DMT400080765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	PGSC0003DMT400049886	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400055488	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400055489	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400055529	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400055531	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400080548	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400080765	AT2G37040.1	21798944
AT1G15670.1	PGSC0003DMT400049886	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400055488	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400055489	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400055529	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400055531	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400080548	AT3G53260.1	21798944
AT1G15670.1	PGSC0003DMT400080765	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042652	Potato	cytosol	96.96	96.96
PGSC0003DMT400042650	Potato	cytosol	96.41	92.33
Solyc06g066770.1.1	Tomato	cytosol	91.16	89.92
PGSC0003DMT400006583	Potato	cytosol	66.3	66.67
PGSC0003DMT400006584	Potato	cytosol	51.66	52.68
AT1G80440.1	Thale cress	cytosol	48.34	49.44
KRH47516	Soybean	cytosol	47.79	48.87
KRH44388	Soybean	cytosol	46.96	48.16
KRH23494	Soybean	cytosol	47.51	48.04
CDY39979	Canola	cytosol	47.51	47.91
AT1G15670.1	Thale cress	cytosol	47.24	47.63
Bra026116.1-P	Field mustard	cytosol	46.96	47.49
CDY36579	Canola	cytosol	46.96	47.49
Bra035183.1-P	Field mustard	cytosol	46.96	47.35
CDX87309	Canola	cytosol	46.96	47.35
GSMUA_AchrUn_...	Banana	mitochondrion	9.67	47.3
CDY58028	Canola	cytosol	46.69	47.21
Bra026753.1-P	Field mustard	cytosol	46.69	47.21
CDY53309	Canola	cytosol	46.69	47.21
CDY69686	Canola	cytosol	46.13	46.78
KRH09825	Soybean	cytosol	44.48	42.04
Os02t0208700-00	Rice	cytosol	33.43	39.41
TraesCS6A01G178900.1	Wheat	cytosol	38.95	37.9
EER88591	Sorghum	cytosol	40.06	37.66
TraesCS6B01G206300.1	Wheat	cytosol	38.67	37.63
Os06t0594400-02	Rice	cytosol	39.5	37.53
Zm00001d036925_P001	Maize	cytosol	39.23	37.08
TraesCS6D01G165600.1	Wheat	cytosol	36.19	36.9
TraesCS7B01G257400.1	Wheat	cytosol	39.23	36.88
TraesCS7D01G352400.1	Wheat	cytosol	38.95	36.62
EES06499	Sorghum	cytosol	36.74	35.66
PGSC0003DMT400060940	Potato	cytosol	32.32	34.11

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102582220	Gene3D:2.120.10.80	MapMan:9.2.1.1.2	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	UniProt:M1BDE7	PFAM:PF00646	PFAM:PF01344	EnsemblPlantsGene:PGSC0003DMG400016541	PGSC:PGSC0003DMG400016541
EnsemblPlants:PGSC0003DMT400042651	PANTHER:PTHR24413	PANTHER:PTHR24413:SF93	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI000296ACB2	RefSeq:XP_006356166.1	:	:	:	:

Description

Kelch repeat-containing F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016541]

Coordinates

chr6:-:49438749..49440144

Molecular Weight (calculated)

40414.2 Da

IEP (calculated)

4.620

GRAVY (calculated)

-0.160

Length

362 amino acids

Sequence
(BLAST)

001: MDLIPGLPNE IALECLIRLP VDQFSKAASV CRKWNGEIKL PEFLRRRKFS GLTRPVLAMV QSMVATVKKS EGDTALFSTQ VYRLSVCDPE NGSWYDLPPI
101: PELIDGLPRF CRIVGVGSDL VVIGGCDPDT WRVMDCVFVY NFISGSWRRG ADMPGQQRSF FGCASDSDRM IVVAGGHDDE KNAMKSALSY DVVKDEWITL
201: PDMVMERDEC KVVFHKGKFH VIGGYPTWAQ GHFENDAEVF DTATWQWQLE DDFLSVINTS PHSCIEGDDG RLYLCRGGDV AVKEDPTWQK LAGLPAGITS
301: VAYLTACQGK LILVGRGQFD ELYSIYALDL DVESDGKVKK WTKVETSDEY SGHVQYGCCL EI

Best Arabidopsis Sequence Match ( AT1G80440.1 )
(BLAST)

001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV

Arabidopsis Description

F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.