CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91925
KRH34854

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	KRG91925	AT2G37040.1	21798944
AT1G15670.1	KRH34854	AT2G37040.1	21798944
AT1G15670.1	KRG91925	AT3G53260.1	21798944
AT1G15670.1	KRH34854	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09825	Soybean	cytosol	81.01	75.72
KRH47516	Soybean	cytosol	65.08	65.82
KRH44388	Soybean	cytosol	61.45	62.32
VIT_09s0002g08870.t01	Wine grape	cytosol	19.55	61.4
VIT_09s0002g04930.t01	Wine grape	cytosol	25.42	59.09
VIT_09s0002g05210.t01	Wine grape	cytosol	21.79	58.21
VIT_09s0002g05080.t01	Wine grape	cytosol	55.03	55.49
GSMUA_AchrUn_...	Banana	mitochondrion	11.45	55.41
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	45.25	53.11
PGSC0003DMT400006584	Potato	cytosol	51.96	52.39
Solyc03g120320.1.1	Tomato	cytosol	51.96	52.39
VIT_09s0002g08860.t01	Wine grape	cytosol	48.88	50.29
VIT_09s0002g08880.t01	Wine grape	cytosol	42.74	49.68
Solyc03g120330.1.1	Tomato	cytosol	49.16	48.75
CDY36579	Canola	cytosol	48.32	48.32
Bra026116.1-P	Field mustard	cytosol	48.32	48.32
AT1G80440.1	Thale cress	cytosol	47.77	48.31
PGSC0003DMT400042652	Potato	cytosol	48.6	48.07
CDY58028	Canola	cytosol	48.04	48.04
Solyc06g066770.1.1	Tomato	cytosol	49.16	47.96
PGSC0003DMT400006583	Potato	cytosol	48.04	47.78
AT1G15670.1	Thale cress	cytosol	47.77	47.63
Bra035183.1-P	Field mustard	cytosol	47.77	47.63
PGSC0003DMT400042651	Potato	cytosol	48.04	47.51
CDY69686	Canola	cytosol	47.21	47.34
Bra026753.1-P	Field mustard	cytosol	47.21	47.21
CDY53309	Canola	cytosol	47.21	47.21
CDX87309	Canola	cytosol	47.21	47.08
CDY39979	Canola	cytosol	46.93	46.8
PGSC0003DMT400042650	Potato	cytosol	48.04	45.5
Os02t0208700-00	Rice	cytosol	36.59	42.67
Os06t0594400-02	Rice	cytosol	44.41	41.73
EER88591	Sorghum	cytosol	44.41	41.3
TraesCS7D01G352400.1	Wheat	cytosol	43.85	40.78
EES06499	Sorghum	cytosol	42.46	40.75
TraesCS6B01G206300.1	Wheat	cytosol	42.18	40.59
Zm00001d036925_P001	Maize	cytosol	43.3	40.47
TraesCS7B01G257400.1	Wheat	cytosol	43.3	40.26
TraesCS6A01G178900.1	Wheat	cytosol	41.62	40.05
TraesCS6D01G165600.1	Wheat	cytosol	38.83	39.15
KRH58914	Soybean	extracellular, plasma membrane	35.2	32.73

Protein Annotations

EntrezGene:100817910	Gene3D:2.120.10.80	MapMan:9.2.1.1.2	EMBL:ACUP02008471	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_13G360600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787
GO:GO:0043161	UniProt:I1M5M8	InterPro:IPR001810	InterPro:IPR015915	EnsemblPlants:KRH23494	ProteinID:KRH23494
ProteinID:KRH23494.1	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24413
PANTHER:PTHR24413:SF93	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000233B53B	:

Description

hypothetical protein

Coordinates

chr13:-:44762069..44763903

Molecular Weight (calculated)

39576.1 Da

IEP (calculated)

4.923

GRAVY (calculated)

-0.147

Length

358 amino acids

Sequence
(BLAST)

001: MELISGLPED VARDCLIRIP YEQFPAVASV CKGWNTEIHS PDFHRRRRTT KQAQEILVTV QSNIDSEKTR TGLLAKSTTN PVYRLSVFEP KTGSWSELPL
101: GPELAFGLPM FCRIAGVGFD LVVMGGWDPD SWKASNSVFI YNFLSAKWRR GADMPGGPRT FFACASDQNN QTVYVAGGHD EEKNALRSVL AYDVARDLWV
201: PLPDMSRERD ECKAVFRRGA LCVVGGYCTE MQGRFERSAE VFDVATWKWG PVEEEFMDAA ACPRTFVDGG DGAMYMCCGG DVVALQGDTW RNVAKVPGEI
301: RNVACVGVWE GAMLVIGSSG FGEPHVGFVL DLKSWAWTKL VSPEEYTGHV QSGCLLEI

Best Arabidopsis Sequence Match ( AT1G80440.1 )
(BLAST)

001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV

Arabidopsis Description

F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.