Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400042652 | Potato | cytosol | 90.19 | 91.44 |
| PGSC0003DMT400042651 | Potato | cytosol | 89.92 | 91.16 |
| PGSC0003DMT400042650 | Potato | cytosol | 89.65 | 87.04 |
| Solyc03g120330.1.1 | Tomato | cytosol | 65.4 | 66.48 |
| Solyc03g120320.1.1 | Tomato | cytosol | 49.05 | 50.7 |
| KRH23494 | Soybean | cytosol | 47.96 | 49.16 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 9.81 | 48.65 |
| AT1G80440.1 | Thale cress | cytosol | 46.59 | 48.31 |
| KRH47516 | Soybean | cytosol | 46.59 | 48.31 |
| CDY39979 | Canola | cytosol | 46.32 | 47.35 |
| Bra026116.1-P | Field mustard | cytosol | 46.05 | 47.21 |
| CDY36579 | Canola | cytosol | 46.05 | 47.21 |
| KRH44388 | Soybean | cytosol | 45.23 | 47.03 |
| Bra035183.1-P | Field mustard | cytosol | 45.78 | 46.8 |
| AT1G15670.1 | Thale cress | cytosol | 45.78 | 46.8 |
| CDX87309 | Canola | cytosol | 45.78 | 46.8 |
| Bra026753.1-P | Field mustard | cytosol | 45.23 | 46.37 |
| CDY53309 | Canola | cytosol | 45.23 | 46.37 |
| CDY58028 | Canola | cytosol | 45.23 | 46.37 |
| CDY69686 | Canola | cytosol | 44.69 | 45.94 |
| KRH09825 | Soybean | cytosol | 45.5 | 43.6 |
| Os02t0208700-00 | Rice | cytosol | 33.24 | 39.74 |
| TraesCS6A01G178900.1 | Wheat | cytosol | 38.96 | 38.44 |
| Os06t0594400-02 | Rice | cytosol | 39.78 | 38.32 |
| EER88591 | Sorghum | cytosol | 40.05 | 38.18 |
| TraesCS6B01G206300.1 | Wheat | cytosol | 38.69 | 38.17 |
| TraesCS7B01G257400.1 | Wheat | cytosol | 39.51 | 37.66 |
| TraesCS6D01G165600.1 | Wheat | cytosol | 36.24 | 37.46 |
| TraesCS7D01G352400.1 | Wheat | cytosol | 39.24 | 37.4 |
| Zm00001d036925_P001 | Maize | cytosol | 38.96 | 37.34 |
| EES06499 | Sorghum | cytosol | 36.51 | 35.92 |
| Solyc10g080610.1.1 | Tomato | cytosol | 32.97 | 35.17 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:2.120.10.80 | MapMan:9.2.1.1.2 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019005 |
| GO:GO:0019538 | GO:GO:0030162 | GO:GO:0031625 | GO:GO:0042787 | GO:GO:0043161 | InterPro:IPR001810 |
| InterPro:IPR015915 | UniProt:K4C7V1 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 |
| PANTHER:PTHR24413 | PANTHER:PTHR24413:SF93 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc06g066770.1 |
| EnsemblPlants:Solyc06g066770.1.1 | UniParc:UPI0002765F7F | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:41949432..41950535
Molecular Weight (calculated)
40858.7 Da
IEP (calculated)
4.785
GRAVY (calculated)
-0.182
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MQATAMDFIP GLPNEIALEC LIRLPVDQFS KAASVCKKWN GEITSPEFRR RRKFSGLTRP VLVMVQSMVA TVKKPEGDTA LFSTQVYRIS VSDPGNGSWY
101: DLPPIPELID GLPRFCRIVG VGSDLVVIGG CDPVTWRVMD CVFIYNFISG SWRRGADMPG QQRSFFGCGS DSDRMIVVAG GHDDEKNALI SALSYDVVKD
201: EWVTLPDMVM ERDECKVVYH KGKFHVIGGY PTWAQGHFEN DAEVFDTATW QWRLEDDFLS VINTSPQSCV EGDDGRLYMC RGGDVAVKED HTWRKLAELP
301: AGIASVAYLT ACQGKLILVG RGPFDEVYSS YALDLDAESD GKVKKWTKVE TPNEYSGHVQ YGCCLEL
101: DLPPIPELID GLPRFCRIVG VGSDLVVIGG CDPVTWRVMD CVFIYNFISG SWRRGADMPG QQRSFFGCGS DSDRMIVVAG GHDDEKNALI SALSYDVVKD
201: EWVTLPDMVM ERDECKVVYH KGKFHVIGGY PTWAQGHFEN DAEVFDTATW QWRLEDDFLS VINTSPQSCV EGDDGRLYMC RGGDVAVKED HTWRKLAELP
301: AGIASVAYLT ACQGKLILVG RGPFDEVYSS YALDLDAESD GKVKKWTKVE TPNEYSGHVQ YGCCLEL
001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
Arabidopsis Description
F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.