Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060940 | Potato | cytosol | 93.9 | 94.17 |
| VIT_08s0007g07120.t01 | Wine grape | cytosol | 65.7 | 65.89 |
| Solyc03g120320.1.1 | Tomato | cytosol | 36.34 | 35.21 |
| Solyc06g066770.1.1 | Tomato | cytosol | 35.17 | 32.97 |
| Solyc03g120330.1.1 | Tomato | cytosol | 32.85 | 31.3 |
| Zm00001d049016_P001 | Maize | cytosol | 33.72 | 31.18 |
| Zm00001d007274_P001 | Maize | cytosol | 33.72 | 31.1 |
| Zm00001d050815_P001 | Maize | nucleus | 32.56 | 30.03 |
| TraesCS4B01G087600.1 | Wheat | cytosol | 31.98 | 29.89 |
| EES08254 | Sorghum | cytosol | 33.14 | 29.84 |
| TraesCS4A01G228600.1 | Wheat | cytosol | 31.69 | 29.62 |
| EES09544 | Sorghum | cytosol | 32.85 | 29.5 |
| Os11t0246200-00 | Rice | cytosol | 32.85 | 29.5 |
| HORVU4Hr1G014970.1 | Barley | cytosol | 31.4 | 29.27 |
| TraesCS4A01G228800.1 | Wheat | cytosol | 31.4 | 29.19 |
| TraesCS4B01G087800.1 | Wheat | cytosol | 31.4 | 29.19 |
| TraesCS4D01G084900.1 | Wheat | cytosol | 31.4 | 29.19 |
| GSMUA_Achr6P28790_001 | Banana | cytosol | 13.95 | 29.09 |
| CDX95589 | Canola | cytosol | 32.56 | 28.72 |
| Os02t0563000-00 | Rice | cytosol | 32.56 | 28.64 |
| CDY17882 | Canola | cytosol, mitochondrion, nucleus | 31.69 | 28.46 |
| OQU85159 | Sorghum | cytosol | 31.4 | 28.12 |
| CDX83439 | Canola | cytosol | 31.69 | 27.95 |
| CDX79780 | Canola | cytosol | 33.72 | 27.75 |
| AT2G44130.1 | Thale cress | cytosol | 32.85 | 27.63 |
| CDX71859 | Canola | cytosol | 31.98 | 27.36 |
| Bra004807.1-P | Field mustard | cytosol | 33.72 | 27.04 |
| CDY41196 | Canola | nucleus | 31.4 | 27.0 |
| TraesCS4D01G085000.1 | Wheat | plastid | 31.69 | 26.78 |
| GSMUA_Achr6P06940_001 | Banana | cytosol | 28.78 | 26.76 |
| Bra000342.1-P | Field mustard | cytosol | 31.1 | 26.68 |
| AT3G59940.1 | Thale cress | cytosol | 31.98 | 26.32 |
| Bra007494.1-P | Field mustard | nucleus | 31.69 | 25.95 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:2.120.10.80 | MapMan:9.2.1.1.2 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031463 | InterPro:IPR001810 | InterPro:IPR015915 | UniProt:K4D2V1 |
| InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 | PANTHER:PTHR24412 | PANTHER:PTHR24412:SF383 |
| SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc10g080610.1 | EnsemblPlants:Solyc10g080610.1.1 |
| UniParc:UPI00027694BB | : | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:61841593..61842627
Molecular Weight (calculated)
38348.4 Da
IEP (calculated)
6.246
GRAVY (calculated)
-0.317
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQNKFTELL PGLPEDIALE CLTRLHYSTH GVASRVCRRW CRILQSKAFY YHRKQTGFTH KTACLVQALP SPVESKPTGQ PRFAISVFDL VSGIWDRVDP
101: IPKYPDGLPM FCQIATTEGK LIVMGGWNPS SWDPIKDVFV YDFMTRRWNQ CMDMPEARSF FAMGATGGRV FIAGGHDESK NALSSAWVFD ISSNEWTELP
201: RMSEERDECE GVIIGSDFCV VSGYDTENQG RFKSSAELYE LSTAQWRRVE DAWGSSQCPR ACVGVGKNGN LTCWAESDPN VKVGACGVDL GYRTLVTGSA
301: YQGAPHGFFF VENNKKQGQN SKLTKINVPD EFSGFVQSGC CVEI
101: IPKYPDGLPM FCQIATTEGK LIVMGGWNPS SWDPIKDVFV YDFMTRRWNQ CMDMPEARSF FAMGATGGRV FIAGGHDESK NALSSAWVFD ISSNEWTELP
201: RMSEERDECE GVIIGSDFCV VSGYDTENQG RFKSSAELYE LSTAQWRRVE DAWGSSQCPR ACVGVGKNGN LTCWAESDPN VKVGACGVDL GYRTLVTGSA
301: YQGAPHGFFF VENNKKQGQN SKLTKINVPD EFSGFVQSGC CVEI
001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI
Arabidopsis Description
F-box/kelch-repeat protein At1g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.