CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93773
EES05455
EES07174
EES07175
EES07176
EES07177
EES12521
OQU81984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59940.1	EER93773	AT2G37040.1	21798944
AT3G59940.1	EES05455	AT2G37040.1	21798944
AT3G59940.1	EES07174	AT2G37040.1	21798944
AT3G59940.1	EES07175	AT2G37040.1	21798944
AT3G59940.1	EES07176	AT2G37040.1	21798944
AT3G59940.1	EES07177	AT2G37040.1	21798944
AT3G59940.1	EES12521	AT2G37040.1	21798944
AT3G59940.1	OQU81984	AT2G37040.1	21798944
AT3G59940.1	EER93773	AT3G53260.1	21798944
AT3G59940.1	EES05455	AT3G53260.1	21798944
AT3G59940.1	EES07174	AT3G53260.1	21798944
AT3G59940.1	EES07175	AT3G53260.1	21798944
AT3G59940.1	EES07176	AT3G53260.1	21798944
AT3G59940.1	EES07177	AT3G53260.1	21798944
AT3G59940.1	EES12521	AT3G53260.1	21798944
AT3G59940.1	OQU81984	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050815_P001	Maize	nucleus	79.43	81.77
Os02t0563000-00	Rice	cytosol	61.72	60.61
EES08254	Sorghum	cytosol	41.93	42.15
EES09544	Sorghum	cytosol	41.41	41.51
GSMUA_Achr6P06940_001	Banana	cytosol	34.9	36.22
GSMUA_Achr6P28790_001	Banana	cytosol	15.36	35.76
EER88591	Sorghum	cytosol	33.59	33.51
EES06499	Sorghum	cytosol	32.03	32.98
CDX83439	Canola	cytosol	32.03	31.54
PGSC0003DMT400060940	Potato	cytosol	28.12	31.49
Solyc10g080610.1.1	Tomato	cytosol	28.12	31.4
Bra000342.1-P	Field mustard	cytosol	31.51	30.17
CDX95589	Canola	cytosol	29.95	29.49
AT2G44130.1	Thale cress	cytosol	30.99	29.1
CDY41196	Canola	nucleus	29.95	28.75
CDX71859	Canola	cytosol	29.95	28.61
CDY17882	Canola	cytosol, mitochondrion, nucleus	28.39	28.46
Bra007494.1-P	Field mustard	nucleus	30.73	28.1
AT3G59940.1	Thale cress	cytosol	30.21	27.75
CDX79780	Canola	cytosol	29.17	26.79
Bra004807.1-P	Field mustard	cytosol	29.69	26.57
KRH58914	Soybean	extracellular, plasma membrane	26.3	26.23
VIT_05s0094g01590.t01	Wine grape	cytosol	23.7	24.93

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A1Z5RNM1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	EnsemblPlants:OQU85159	ProteinID:OQU85159	ProteinID:OQU85159.1	PFAM:PF00646	PFAM:PF01344
PANTHER:PTHR24413	PANTHER:PTHR24413:SF153	SMART:SM00256	SMART:SM00612	EnsemblPlantsGene:SORBI_3004G182700	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0003C67FAA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:53658658..53659812

Molecular Weight (calculated)

40110.9 Da

IEP (calculated)

5.174

GRAVY (calculated)

-0.225

Length

384 amino acids

Sequence
(BLAST)

001: MAMEAEEDRG GLEGELIPGL PDDVAMECLA RVPSRSHRRM RRVCRGWRGT VGSAEFRRRR RAAGASEDIV FLVQTAPARG DGKGSTPECA LVAANLTTGE
101: WRRVEGHDEG WGPVPLFAQC AAAGDGRHVA IVGGWDPDTL RPTRDVRLLD VPAGTWRRGP RTPDSRSFFG CAGGDGNVYI AGGHDECKNA LRSAFAYSVA
201: GAGAADAAWR ALPDMSEERD EPQLVVVATP GRRVLLAASG YPTEAQGAFR STAECYHDAG GDAWTSEGDV IPDGGDTAGK TCLASVRGTV WAVGAGKDGV
301: REWDGAARAW RDVADGPPGM KACVKAVGVG NGEAVFVFGT VADAAADGVK YSAAVMEASG GAWMRVPVPS EFGGFVYSAA AVSI

Best Arabidopsis Sequence Match ( AT2G44130.1 )
(BLAST)

001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV

Arabidopsis Description

F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.