Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES08254 | Sorghum | cytosol | 97.65 | 97.91 |
| Zm00001d049016_P001 | Maize | cytosol | 85.64 | 88.17 |
| Zm00001d007274_P001 | Maize | cytosol | 83.29 | 85.52 |
| Os11t0246200-00 | Rice | cytosol | 82.77 | 82.77 |
| TraesCS4A01G228600.1 | Wheat | cytosol | 78.33 | 81.52 |
| TraesCS4A01G228800.1 | Wheat | cytosol | 78.59 | 81.35 |
| HORVU4Hr1G014970.1 | Barley | cytosol | 78.33 | 81.3 |
| TraesCS4B01G087600.1 | Wheat | cytosol | 78.07 | 81.25 |
| TraesCS4B01G087800.1 | Wheat | cytosol | 78.33 | 81.08 |
| TraesCS4D01G084900.1 | Wheat | cytosol | 78.07 | 80.81 |
| TraesCS4D01G085000.1 | Wheat | plastid | 78.59 | 73.96 |
| OQU85159 | Sorghum | cytosol | 41.51 | 41.41 |
| GSMUA_Achr6P06940_001 | Banana | cytosol | 37.6 | 38.92 |
| GSMUA_Achr6P28790_001 | Banana | cytosol | 16.45 | 38.18 |
| EER88591 | Sorghum | cytosol | 33.94 | 33.77 |
| EES06499 | Sorghum | cytosol | 32.64 | 33.51 |
| CDX83439 | Canola | cytosol | 33.94 | 33.33 |
| PGSC0003DMT400060940 | Potato | cytosol | 29.77 | 33.24 |
| Bra000342.1-P | Field mustard | cytosol | 34.73 | 33.17 |
| Solyc10g080610.1.1 | Tomato | cytosol | 29.5 | 32.85 |
| KRH58914 | Soybean | extracellular, plasma membrane | 32.9 | 32.73 |
| CDX95589 | Canola | cytosol | 33.16 | 32.56 |
| CDY41196 | Canola | nucleus | 33.42 | 32.0 |
| AT2G44130.1 | Thale cress | cytosol | 33.94 | 31.78 |
| CDX71859 | Canola | cytosol | 33.16 | 31.59 |
| CDY17882 | Canola | cytosol, mitochondrion, nucleus | 31.07 | 31.07 |
| Bra007494.1-P | Field mustard | nucleus | 33.94 | 30.95 |
| CDX79780 | Canola | cytosol | 33.16 | 30.38 |
| AT3G59940.1 | Thale cress | cytosol | 32.9 | 30.14 |
| Bra004807.1-P | Field mustard | cytosol | 33.68 | 30.07 |
| VIT_05s0094g01590.t01 | Wine grape | cytosol | 27.42 | 28.77 |
Protein Annotations
| Gene3D:2.120.10.80 | EntrezGene:8057145 | MapMan:9.2.1.1.2 | UniProt:C5Y7S1 | EnsemblPlants:EES09544 | ProteinID:EES09544 |
| ProteinID:EES09544.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF34 | SMART:SM00612 | EnsemblPlantsGene:SORBI_3005G085200 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| unigene:Sbi.20127 | UniParc:UPI0001A868EA | RefSeq:XP_002450556.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr5:-:11674693..11678892
Molecular Weight (calculated)
40945.3 Da
IEP (calculated)
8.215
GRAVY (calculated)
-0.307
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MMRSPRGVGG GCYRGAGGQD QHVDLIPGIP DDVAVDCLAR VPHASHRAMR GVCRGWRSAA STPAFASARA QADANEDLVY LMQFGNPSAA ADDAEPKGDD
101: GPANTPAYGV AVYNVTTGEW RRDRGAPPVV PVFAQCAAVG TRLAVLGGWD PRTFEPVADV HVLDAATGRW RRGAPMRSAR SFFACAEAGG KIYVAGGHDK
201: HKNALKTAEA YDPRADAWDP LPDMSEERDE CDGMATVAGD RFLAVSGYRT ARQGGFERDA EWFDPAARAW RRLERVRAPP SAAHVVVKGR VWCIEGNAVM
301: EWMGTRRGWR EVGPYPPGLK AGTARAVCVG GGEKVVVTGA LDGEGGGGRH ALWVFDVKTK SWTVVRPPSE FAGFVFSVAS VRI
101: GPANTPAYGV AVYNVTTGEW RRDRGAPPVV PVFAQCAAVG TRLAVLGGWD PRTFEPVADV HVLDAATGRW RRGAPMRSAR SFFACAEAGG KIYVAGGHDK
201: HKNALKTAEA YDPRADAWDP LPDMSEERDE CDGMATVAGD RFLAVSGYRT ARQGGFERDA EWFDPAARAW RRLERVRAPP SAAHVVVKGR VWCIEGNAVM
301: EWMGTRRGWR EVGPYPPGLK AGTARAVCVG GGEKVVVTGA LDGEGGGGRH ALWVFDVKTK SWTVVRPPSE FAGFVFSVAS VRI
001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
Arabidopsis Description
F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.