Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G228600.1 | Wheat | cytosol | 97.28 | 97.28 |
| TraesCS4B01G087800.1 | Wheat | cytosol | 89.67 | 89.19 |
| TraesCS4D01G085000.1 | Wheat | plastid | 97.83 | 88.45 |
| Zm00001d049016_P001 | Maize | cytosol | 81.25 | 80.38 |
| Os11t0246200-00 | Rice | cytosol | 82.61 | 79.37 |
| EES09544 | Sorghum | cytosol | 81.25 | 78.07 |
| Zm00001d007274_P001 | Maize | cytosol | 79.08 | 78.02 |
| EES08254 | Sorghum | cytosol | 80.98 | 78.01 |
| GSMUA_Achr6P06940_001 | Banana | cytosol | 40.22 | 40.0 |
| GSMUA_Achr6P28790_001 | Banana | cytosol | 16.58 | 36.97 |
| CDX83439 | Canola | cytosol | 35.33 | 33.33 |
| Bra000342.1-P | Field mustard | cytosol | 35.6 | 32.67 |
| PGSC0003DMT400060940 | Potato | cytosol | 30.43 | 32.65 |
| CDX95589 | Canola | cytosol | 34.51 | 32.56 |
| CDY41196 | Canola | nucleus | 35.33 | 32.5 |
| TraesCS6B01G206300.1 | Wheat | cytosol | 32.61 | 32.26 |
| Solyc10g080610.1.1 | Tomato | cytosol | 29.89 | 31.98 |
| CDX71859 | Canola | cytosol | 34.78 | 31.84 |
| Bra007494.1-P | Field mustard | nucleus | 36.14 | 31.67 |
| TraesCS7B01G257400.1 | Wheat | cytosol | 32.88 | 31.43 |
| CDY17882 | Canola | cytosol, mitochondrion, nucleus | 32.34 | 31.07 |
| AT3G59940.1 | Thale cress | cytosol | 35.05 | 30.86 |
| AT2G44130.1 | Thale cress | cytosol | 34.24 | 30.81 |
| KRH58914 | Soybean | extracellular, plasma membrane | 32.07 | 30.65 |
| CDX79780 | Canola | cytosol | 34.78 | 30.62 |
| Bra004807.1-P | Field mustard | cytosol | 35.33 | 30.3 |
| VIT_05s0094g01590.t01 | Wine grape | cytosol | 29.35 | 29.59 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G087600.1 | EnsemblPlantsGene:TraesCS4B01G087600 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF34 | PFAM:PF00646 | PFAM:PF01344 | SEG:seg | SMART:SM00256 |
| SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | MapMan:9.2.1.1.2 | : | : |
Description
No Description!
Coordinates
chr4B:-:88155263..88156605
Molecular Weight (calculated)
39720.9 Da
IEP (calculated)
5.737
GRAVY (calculated)
-0.267
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNPKSRVQE WEAEHIDLIP GMPDDIAVDC LARVPHGSYR SMRRVCRGWR SAAAAPDFAL ARAEAGANED LVFLMQFGNP VAGDGGAPEN TPAYGVAVYN
101: VTTGEWHRES SAPPVPMFAQ CAAVGTRVAV MGGWDPNTFE PVADVNVLDA TTGVWRRGAP MRSARSFFAC AEAGGKIYVA GGHDKLKNAL KTAEAYDAEA
201: DGWDPLPDMS EERDECDGMA TVAGDRFLAV SGYRTGRQGG FERDAEWFDP ATREWRRLER VRAPPSAAHV VVRGRVWCIE GTAVMEWRGE RRGWLEVGPY
301: PPGLKAGTAR AVAVGGGERV VVTGAIESEG GGGGHALWVF DVKSKNWTVV RPPPQFAGFV FSLASVRV
101: VTTGEWHRES SAPPVPMFAQ CAAVGTRVAV MGGWDPNTFE PVADVNVLDA TTGVWRRGAP MRSARSFFAC AEAGGKIYVA GGHDKLKNAL KTAEAYDAEA
201: DGWDPLPDMS EERDECDGMA TVAGDRFLAV SGYRTGRQGG FERDAEWFDP ATREWRRLER VRAPPSAAHV VVRGRVWCIE GTAVMEWRGE RRGWLEVGPY
301: PPGLKAGTAR AVAVGGGERV VVTGAIESEG GGGGHALWVF DVKSKNWTVV RPPPQFAGFV FSLASVRV
001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
Arabidopsis Description
F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.