Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000342.1-P | Field mustard | cytosol | 94.62 | 92.02 |
| CDX95589 | Canola | cytosol | 81.28 | 81.28 |
| AT2G44130.1 | Thale cress | cytosol | 68.97 | 65.77 |
| CDY17882 | Canola | cytosol, mitochondrion, nucleus | 62.56 | 63.71 |
| CDX79780 | Canola | cytosol | 64.62 | 60.29 |
| CDX71859 | Canola | cytosol | 57.18 | 55.47 |
| CDY41196 | Canola | nucleus | 55.9 | 54.5 |
| VIT_05s0094g01590.t01 | Wine grape | cytosol | 33.33 | 35.62 |
| TraesCS4B01G087600.1 | Wheat | cytosol | 33.33 | 35.33 |
| TraesCS4A01G228600.1 | Wheat | cytosol | 33.08 | 35.05 |
| Zm00001d049016_P001 | Maize | cytosol | 33.33 | 34.95 |
| TraesCS4B01G087800.1 | Wheat | cytosol | 32.31 | 34.05 |
| TraesCS4A01G228800.1 | Wheat | cytosol | 32.31 | 34.05 |
| Zm00001d007274_P001 | Maize | cytosol | 32.56 | 34.05 |
| EES09544 | Sorghum | cytosol | 33.33 | 33.94 |
| HORVU4Hr1G014970.1 | Barley | cytosol | 32.05 | 33.88 |
| TraesCS4D01G084900.1 | Wheat | cytosol | 32.05 | 33.78 |
| EES08254 | Sorghum | cytosol | 32.56 | 33.25 |
| Zm00001d050815_P001 | Maize | nucleus | 31.79 | 33.24 |
| Os11t0246200-00 | Rice | cytosol | 32.05 | 32.64 |
| OQU85159 | Sorghum | cytosol | 31.54 | 32.03 |
| PGSC0003DMT400060940 | Potato | cytosol | 27.95 | 31.78 |
| Solyc10g080610.1.1 | Tomato | cytosol | 27.95 | 31.69 |
| TraesCS4D01G085000.1 | Wheat | plastid | 32.82 | 31.45 |
| GSMUA_Achr6P06940_001 | Banana | cytosol | 28.97 | 30.54 |
| Os02t0563000-00 | Rice | cytosol | 30.51 | 30.43 |
| KRH58914 | Soybean | extracellular, plasma membrane | 30.0 | 30.39 |
| CDY69686 | Canola | cytosol | 27.18 | 29.69 |
| CDY53309 | Canola | cytosol | 26.92 | 29.33 |
| CDY58028 | Canola | cytosol | 26.67 | 29.05 |
| CDY36579 | Canola | cytosol | 26.41 | 28.77 |
| CDX87309 | Canola | cytosol | 26.41 | 28.69 |
| CDY39979 | Canola | cytosol | 26.15 | 28.41 |
| GSMUA_Achr6P28790_001 | Banana | cytosol | 10.0 | 23.64 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:2.120.10.80 | MapMan:9.2.1.1.2 | EnsemblPlants:CDX83439 | ProteinID:CDX83439 | ProteinID:CDX83439.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00139017001 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF34 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI0004EF2C06 | SEG:seg | : | : | : | : |
Description
BnaA03g20670D
Coordinates
chrLK031832:-:1566771..1567979
Molecular Weight (calculated)
43303.0 Da
IEP (calculated)
7.827
GRAVY (calculated)
-0.472
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKSSNRAEE VSKDLIPGLP SELAMECLVR VPYQFQSAMR SVCRSWRSLL SDSSFIRERR RCGTAELLLC FVQPLSPPNP AYKAKGEKRA STTPRFGLSV
101: YNATMSTWNR VAFPQQQIPL FCECVAVQDA GKILLIGGWD PETLQPVKDV YVLEGSGRSW RRGAPMKESR SFFACASVGP TKVYVAGGHD EQKNALRSAE
201: VYDVEKDEWS TIPSMAEERD ECQGFCMGTG LGGFCVLSGY ATEAQGRFRQ DGEVYDPTTK SWSRIENVWP FPDTSPRGRT ITAGDTRCSS RLRSFSTDRE
301: LQSNSQWESR DSSRKWKLDV EVIQLPASGS SVYVGSSGGE SVIMIGGRRE SEGAMMKTTT TEKNAGKWSH VNDIPFGFST LPFSHASIYV
101: YNATMSTWNR VAFPQQQIPL FCECVAVQDA GKILLIGGWD PETLQPVKDV YVLEGSGRSW RRGAPMKESR SFFACASVGP TKVYVAGGHD EQKNALRSAE
201: VYDVEKDEWS TIPSMAEERD ECQGFCMGTG LGGFCVLSGY ATEAQGRFRQ DGEVYDPTTK SWSRIENVWP FPDTSPRGRT ITAGDTRCSS RLRSFSTDRE
301: LQSNSQWESR DSSRKWKLDV EVIQLPASGS SVYVGSSGGE SVIMIGGRRE SEGAMMKTTT TEKNAGKWSH VNDIPFGFST LPFSHASIYV
001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
Arabidopsis Description
F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.