Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G087600.1 | Wheat | cytosol | 97.28 | 97.28 |
| TraesCS4D01G085000.1 | Wheat | plastid | 98.91 | 89.43 |
| TraesCS4A01G228800.1 | Wheat | cytosol | 88.59 | 88.11 |
| Zm00001d049016_P001 | Maize | cytosol | 81.25 | 80.38 |
| Os11t0246200-00 | Rice | cytosol | 82.61 | 79.37 |
| Zm00001d007274_P001 | Maize | cytosol | 79.62 | 78.55 |
| EES09544 | Sorghum | cytosol | 81.52 | 78.33 |
| EES08254 | Sorghum | cytosol | 81.25 | 78.27 |
| GSMUA_Achr6P06940_001 | Banana | cytosol | 40.22 | 40.0 |
| GSMUA_Achr6P28790_001 | Banana | cytosol | 16.85 | 37.58 |
| CDX83439 | Canola | cytosol | 35.05 | 33.08 |
| TraesCS6A01G178900.1 | Wheat | cytosol | 33.15 | 32.8 |
| Bra000342.1-P | Field mustard | cytosol | 35.33 | 32.42 |
| CDX95589 | Canola | cytosol | 34.24 | 32.31 |
| CDY41196 | Canola | nucleus | 35.05 | 32.25 |
| PGSC0003DMT400060940 | Potato | cytosol | 29.89 | 32.07 |
| Solyc10g080610.1.1 | Tomato | cytosol | 29.62 | 31.69 |
| CDX71859 | Canola | cytosol | 34.51 | 31.59 |
| Bra007494.1-P | Field mustard | nucleus | 35.87 | 31.43 |
| CDY17882 | Canola | cytosol, mitochondrion, nucleus | 32.61 | 31.33 |
| AT2G44130.1 | Thale cress | cytosol | 34.78 | 31.3 |
| CDX79780 | Canola | cytosol | 35.05 | 30.86 |
| AT3G59940.1 | Thale cress | cytosol | 34.78 | 30.62 |
| Bra004807.1-P | Field mustard | cytosol | 35.33 | 30.3 |
| KRH58914 | Soybean | extracellular, plasma membrane | 31.52 | 30.13 |
| VIT_05s0094g01590.t01 | Wine grape | cytosol | 29.35 | 29.59 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G228600.1 | EnsemblPlantsGene:TraesCS4A01G228600 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF34 | PFAM:PF00646 | PFAM:PF01344 | SEG:seg | SMART:SM00256 |
| SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | MapMan:9.2.1.1.2 | : | : |
Description
No Description!
Coordinates
chr4A:-:537182717..537184053
Molecular Weight (calculated)
39732.9 Da
IEP (calculated)
5.743
GRAVY (calculated)
-0.264
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNPKSRVQE WEADHVELIP GMPDDVAVDC LARVPHGSYR SMRRVCRGWR SAAAAPEFAL ARAEAGANED LVFLMQFGNP VAGDDGAPEN APAYGVAVYN
101: VTTGEWHRES SAPPVPMFAQ CAAVGTRVAV MGGWDPKTFE PVADVNVLDA ATGVWRRGAP MRSARSFFAC AEAGGKIYVA GGHDKLKNAL KTAEAYDAEA
201: DGWDPLPDMS EERDECDGMA TVAGDRFLAV SGYRTGRQGG FERDAEWFDP ATREWRRLER VRAPPTAAHV VVRGRVWCIE GTAVMEWRGE RRGWLEVGPY
301: PPGLKAGTAR AVAVGGGERV VVTGAIESEG GGGGHALWVF DVKSKNWTVV RPPPQFAGFV FSLASVRV
101: VTTGEWHRES SAPPVPMFAQ CAAVGTRVAV MGGWDPKTFE PVADVNVLDA ATGVWRRGAP MRSARSFFAC AEAGGKIYVA GGHDKLKNAL KTAEAYDAEA
201: DGWDPLPDMS EERDECDGMA TVAGDRFLAV SGYRTGRQGG FERDAEWFDP ATREWRRLER VRAPPTAAHV VVRGRVWCIE GTAVMEWRGE RRGWLEVGPY
301: PPGLKAGTAR AVAVGGGERV VVTGAIESEG GGGGHALWVF DVKSKNWTVV RPPPQFAGFV FSLASVRV
001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
Arabidopsis Description
F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.