Factsheet for GSMUA_Achr6P28790_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
extracellular 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09070_001
GSMUA_Achr2P00240_001
GSMUA_Achr5P03950_001
GSMUA_Achr5P18560_001
GSMUA_Achr8P18960_001
GSMUA_Achr9P15990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59940.1	GSMUA_Achr11P...	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr11P...	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr1P09070_001	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr2P00240_001	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr5P03950_001	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr5P18560_001	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr8P18960_001	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr9P15990_001	AT2G37040.1	21798944
AT3G59940.1	GSMUA_Achr11P...	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr11P...	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr1P09070_001	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr2P00240_001	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr5P03950_001	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr5P18560_001	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr8P18960_001	AT3G53260.1	21798944
AT3G59940.1	GSMUA_Achr9P15990_001	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P06940_001	Banana	cytosol	59.39	26.49
Zm00001d007274_P001	Maize	cytosol	40.0	17.69
Zm00001d049016_P001	Maize	cytosol	38.79	17.2
Os11t0246200-00	Rice	cytosol	39.39	16.97
Zm00001d050815_P001	Maize	nucleus	38.18	16.89
TraesCS4A01G228600.1	Wheat	cytosol	37.58	16.85
EES08254	Sorghum	cytosol	38.79	16.75
TraesCS4B01G087600.1	Wheat	cytosol	36.97	16.58
EES09544	Sorghum	cytosol	38.18	16.45
HORVU4Hr1G014970.1	Barley	cytosol	36.36	16.26
TraesCS4D01G084900.1	Wheat	cytosol	35.76	15.95
TraesCS4B01G087800.1	Wheat	cytosol	35.76	15.95
TraesCS4A01G228800.1	Wheat	cytosol	35.76	15.95
Os02t0563000-00	Rice	cytosol	36.97	15.6
OQU85159	Sorghum	cytosol	35.76	15.36
TraesCS4D01G085000.1	Wheat	plastid	36.97	14.99
PGSC0003DMT400060940	Potato	cytosol	29.7	14.29
VIT_05s0094g01590.t01	Wine grape	cytosol	30.91	13.97
Solyc10g080610.1.1	Tomato	cytosol	29.09	13.95
GSMUA_Achr5P24900_001	Banana	cytosol	28.48	13.66
GSMUA_Achr10P...	Banana	cytosol	29.09	13.08
KRH58914	Soybean	extracellular, plasma membrane	30.3	12.99
GSMUA_Achr10P...	Banana	cytosol	24.85	11.52
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	19.39	11.35
GSMUA_Achr10P...	Banana	cytosol	24.24	11.24
GSMUA_Achr5P06210_001	Banana	cytosol	23.64	11.17
GSMUA_AchrUn_...	Banana	mitochondrion	4.85	10.81
CDY17882	Canola	cytosol, mitochondrion, nucleus	24.85	10.71
CDX79780	Canola	cytosol	26.67	10.53
Bra004807.1-P	Field mustard	cytosol	26.67	10.26
GSMUA_Achr10P...	Banana	cytosol	21.82	10.08
CDX83439	Canola	cytosol	23.64	10.0
CDY41196	Canola	nucleus	23.64	9.75
AT2G44130.1	Thale cress	cytosol	23.64	9.54
Bra007494.1-P	Field mustard	nucleus	24.24	9.52
CDX71859	Canola	cytosol	23.03	9.45
CDX95589	Canola	cytosol	21.82	9.23
Bra000342.1-P	Field mustard	cytosol	22.42	9.23
AT3G59940.1	Thale cress	cytosol	21.82	8.61

Protein Annotations

EnsemblPlants:GSMUA_Achr6P28790_001	EnsemblPlants:GSMUA_Achr6T28790_001	EnsemblPlantsGene:GSMUA_Achr6G28790_001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24414	PANTHER:PTHR24414:SF34	SEG:seg
SUPFAM:SSF117281	UniParc:UPI0002958C53	UniProt:M0TB24	MapMan:35.2	:	:

Description

Putative F-box/kelch-repeat protein At2g44130 [Source:GMGC_GENE;Acc:GSMUA_Achr6G28790_001]

Coordinates

chr6:+:29093915..29094591

Molecular Weight (calculated)

17079.1 Da

IEP (calculated)

4.664

GRAVY (calculated)

-0.044

Length

165 amino acids

Sequence
(BLAST)

001: MGEERDECQG VAAGGRFWAV SGYGTEGQGR FVGAAEWYDA EAGTWTREEG LGEAGGATCV WMSGGRMWSL EGGGGVGGVR EYEGSGKGWR EVAPLPGMMR
101: PCAAAAVSCA GERVFVVAAQ AVAEAEVGGG GHRGWILEVG PQRWTRVVTP VGFSGFVFSA AAVRI

Best Arabidopsis Sequence Match ( AT2G44130.1 )
(BLAST)

001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV

Arabidopsis Description

F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.