Factsheet for GSMUA_Achr5P06210_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P24900_001	Banana	cytosol	57.31	58.14
GSMUA_AchrUn_...	Banana	mitochondrion	12.03	56.76
GSMUA_Achr10P...	Banana	cytosol	55.59	52.86
GSMUA_Achr10P...	Banana	cytosol	51.0	49.86
GSMUA_Achr10P...	Banana	cytosol	49.86	48.88
Os02t0208700-00	Rice	cytosol	42.98	48.86
GSMUA_Achr10P...	Banana	cytosol	49.0	48.03
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	38.68	47.87
Os06t0594400-02	Rice	cytosol	52.15	47.77
TraesCS6A01G178900.1	Wheat	cytosol	50.43	47.31
TraesCS6B01G206300.1	Wheat	cytosol	50.14	47.04
EER88591	Sorghum	cytosol	51.58	46.75
Zm00001d036925_P001	Maize	cytosol	51.29	46.74
EES06499	Sorghum	cytosol	49.57	46.38
TraesCS6D01G165600.1	Wheat	cytosol	46.99	46.2
TraesCS7B01G257400.1	Wheat	cytosol	50.72	45.97
TraesCS7D01G352400.1	Wheat	cytosol	50.43	45.71
GSMUA_Achr6P06940_001	Banana	cytosol	28.37	26.76
GSMUA_Achr6P28790_001	Banana	cytosol	11.17	23.64

Protein Annotations

EnsemblPlants:GSMUA_Achr5P06210_001	EnsemblPlants:GSMUA_Achr5T06210_001	EnsemblPlantsGene:GSMUA_Achr5G06210_001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413
PANTHER:PTHR24413:SF165	PFAM:PF01344	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00029678B4
UniProt:M0SW50	MapMan:9.2.1.1.2	:	:	:	:

Description

Putative F-box/kelch-repeat protein At1g15670 [Source:GMGC_GENE;Acc:GSMUA_Achr5G06210_001]

Coordinates

chr5:-:4581824..4583086

Molecular Weight (calculated)

38248.5 Da

IEP (calculated)

6.979

GRAVY (calculated)

-0.204

Length

349 amino acids

Sequence
(BLAST)

001: MEDELIPGLP QEIARECLIR VPFDAFRTVQ AVCKLWKHDL ESASFHRHRK SVGLDRPVVV LAQSDPAPVV AASANGEKSY PSRLLYRLAL FEPTTGAWSS
101: LPPIPGRPHG LPLFCQLAAV GRELVVVGGW DPRTWAASDE VHVYDLVSGA WRRGAPMPGP RRSFFACAAS EERAAVFVAG GHDESKNALR SALAYDVAAD
201: AWMQLPDMAR QRDECRGVFA SGGFHVVGGY PTEAQGQFSR SAETFDVAAW RWSAVEEGRL EEAACPRTCE GGGAWRRVAE LPREVRVALQ MVAWEGGFMV
301: LGSGTQRGAQ VAYIVDIESG EGKGMKKWRK VELQREYSGH VQAGCCFHI

Best Arabidopsis Sequence Match ( AT1G15670.1 )
(BLAST)

001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI

Arabidopsis Description

F-box/kelch-repeat protein At1g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.