CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93773
EES05455
EES07174
EES07175
EES07176
EES07177
EES12521
OQU81984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	EER93773	AT2G37040.1	21798944
AT1G15670.1	EES05455	AT2G37040.1	21798944
AT1G15670.1	EES07174	AT2G37040.1	21798944
AT1G15670.1	EES07175	AT2G37040.1	21798944
AT1G15670.1	EES07176	AT2G37040.1	21798944
AT1G15670.1	EES07177	AT2G37040.1	21798944
AT1G15670.1	EES12521	AT2G37040.1	21798944
AT1G15670.1	OQU81984	AT2G37040.1	21798944
AT1G15670.1	EER93773	AT3G53260.1	21798944
AT1G15670.1	EES05455	AT3G53260.1	21798944
AT1G15670.1	EES07174	AT3G53260.1	21798944
AT1G15670.1	EES07175	AT3G53260.1	21798944
AT1G15670.1	EES07176	AT3G53260.1	21798944
AT1G15670.1	EES07177	AT3G53260.1	21798944
AT1G15670.1	EES12521	AT3G53260.1	21798944
AT1G15670.1	OQU81984	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036925_P001	Maize	cytosol	78.18	78.59
Os06t0594400-02	Rice	cytosol	76.36	77.17
TraesCS7D01G352400.1	Wheat	cytosol	76.1	76.1
TraesCS7B01G257400.1	Wheat	cytosol	75.58	75.58
EES06499	Sorghum	cytosol	59.74	61.66
GSMUA_Achr5P06210_001	Banana	cytosol	46.75	51.58
VIT_09s0002g08870.t01	Wine grape	cytosol	15.06	50.88
GSMUA_Achr5P24900_001	Banana	cytosol	45.45	50.87
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	36.62	46.23
VIT_09s0002g05080.t01	Wine grape	cytosol	42.34	45.92
KRH47516	Soybean	cytosol	41.04	44.63
KRH44388	Soybean	cytosol	40.78	44.48
GSMUA_Achr10P...	Banana	cytosol	42.34	44.41
KRH23494	Soybean	cytosol	41.3	44.41
PGSC0003DMT400006584	Potato	cytosol	40.26	43.66
GSMUA_Achr10P...	Banana	cytosol	40.26	43.42
Solyc03g120320.1.1	Tomato	cytosol	39.48	42.82
VIT_09s0002g08880.t01	Wine grape	cytosol	33.51	41.88
VIT_09s0002g08860.t01	Wine grape	cytosol	37.66	41.67
GSMUA_Achr10P...	Banana	cytosol	37.4	40.45
AT1G80440.1	Thale cress	cytosol	37.14	40.4
Bra026116.1-P	Field mustard	cytosol	37.4	40.22
CDY58028	Canola	cytosol	37.4	40.22
CDY36579	Canola	cytosol	37.4	40.22
PGSC0003DMT400042651	Potato	cytosol	37.66	40.06
Solyc06g066770.1.1	Tomato	cytosol	38.18	40.05
Solyc03g120330.1.1	Tomato	cytosol	37.4	39.89
GSMUA_Achr10P...	Banana	cytosol, plasma membrane, plastid	29.09	39.72
KRH09825	Soybean	cytosol	39.48	39.69
PGSC0003DMT400006583	Potato	cytosol	36.88	39.44
CDX87309	Canola	cytosol	36.62	39.28
Bra035183.1-P	Field mustard	cytosol	36.62	39.28
CDY39979	Canola	cytosol	36.62	39.28
PGSC0003DMT400042652	Potato	cytosol	36.88	39.23
GSMUA_Achr10P...	Banana	cytosol	36.1	39.04
CDY53309	Canola	cytosol	36.1	38.83
Bra026753.1-P	Field mustard	cytosol	36.1	38.83
CDY69686	Canola	cytosol	35.84	38.66
AT1G15670.1	Thale cress	cytosol	35.84	38.44
PGSC0003DMT400042650	Potato	cytosol	36.62	37.3
VIT_09s0002g04930.t01	Wine grape	cytosol	14.81	37.01
VIT_09s0002g05210.t01	Wine grape	cytosol	12.21	35.07
EES08254	Sorghum	cytosol	34.29	34.55
EES09544	Sorghum	cytosol	33.77	33.94
OQU85159	Sorghum	cytosol	33.51	33.59

Protein Annotations

Gene3D:2.120.10.80	EntrezGene:8065053	MapMan:9.2.1.1.2	UniProt:C5Z595	EnsemblPlants:EER88591	ProteinID:EER88591
ProteinID:EER88591.1	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625
GO:GO:0042787	GO:GO:0043161	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24413	PANTHER:PTHR24413:SF165	SMART:SM00612	EnsemblPlantsGene:SORBI_3010G179800
SUPFAM:SSF117281	unigene:Sbi.14747	UniParc:UPI0001A89385	RefSeq:XP_002437224.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:51789536..51791889

Molecular Weight (calculated)

40872.2 Da

IEP (calculated)

5.024

GRAVY (calculated)

-0.195

Length

385 amino acids

Sequence
(BLAST)

001: MGELIPGLPE EVARECLVRV GFDQLPVVRR ISRQWKSEVE SPDYHRQRRA EGLARPVLAL VQAQPTAPPA DDAGPVADKH STAAAAGSGG GPANSYRMVL
101: LDPVEGRWAP LPPLPGPSES LPLFCQVAAV DGGQGRRKRL VVVGGWHPET WAPTDAVFVY DFLTGAWRRG APMPGPRRSF FACAAVGGAV YVAGGHDDEK
201: NALRSALAYD PEADAWAQLP DMAEERDEPR GLCVAGRFFL VVGGYPTQAQ GRFVGSAECF DPATSAWAPV DDLVEDGVCP RTCCAAPPGS GSERMYMLSR
301: DGHLVARDGG AAWRPVAQVP EDARTAATVS VIPDDRVVVI GSGCHGGDQT VYVLREEAGK GASWTRAAAP PEFSGHVQAS CFLEI

Best Arabidopsis Sequence Match ( AT1G80440.1 )
(BLAST)

001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV

Arabidopsis Description

F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.