Factsheet for GSMUA_Achr10P23790_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 2
cytosol 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	68.09	53.93
GSMUA_Achr10P...	Banana	cytosol	68.09	53.78
GSMUA_Achr10P...	Banana	cytosol	66.67	52.81
GSMUA_Achr10P...	Banana	cytosol	68.44	52.59
GSMUA_AchrUn_...	Banana	mitochondrion	10.28	39.19
GSMUA_Achr5P06210_001	Banana	cytosol	47.87	38.68
GSMUA_Achr5P24900_001	Banana	cytosol	44.68	36.63
Os02t0208700-00	Rice	cytosol	34.4	31.6
EES06499	Sorghum	cytosol	40.78	30.83
TraesCS6D01G165600.1	Wheat	cytosol	37.94	30.14
Zm00001d036925_P001	Maize	cytosol	40.43	29.77
Os06t0594400-02	Rice	cytosol	39.36	29.13
EER88591	Sorghum	cytosol	39.72	29.09
TraesCS7B01G257400.1	Wheat	cytosol	39.36	28.83
TraesCS7D01G352400.1	Wheat	cytosol	39.36	28.83
TraesCS6A01G178900.1	Wheat	cytosol	37.94	28.76
TraesCS6B01G206300.1	Wheat	cytosol	37.94	28.76
GSMUA_Achr6P28790_001	Banana	cytosol	11.35	19.39
GSMUA_Achr6P06940_001	Banana	cytosol	20.57	15.68

Protein Annotations

EnsemblPlants:GSMUA_Achr10P23790_001	EnsemblPlants:GSMUA_Achr10T23790_001	EnsemblPlantsGene:GSMUA_Achr10G23790_001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF93
PFAM:PF01344	SEG:seg	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI0002969B4E	UniProt:M0RKV4
MapMan:35.1	:	:	:	:	:

Description

Putative F-box/kelch-repeat protein At1g15670 [Source:GMGC_GENE;Acc:GSMUA_Achr10G23790_001]

Coordinates

chr10:-:28358275..28359123

Molecular Weight (calculated)

30889.5 Da

IEP (calculated)

6.963

GRAVY (calculated)

0.101

Length

282 amino acids

Sequence
(BLAST)

001: MVHRLVIFEP ATGVWSSLPP CPNLTHGLPH ICRLAAVGTE LVVVGGWKID TCLTTDEVHV YDFVSGEWRR GSPLPWPLRS SFACAATHDS DKGCRTVYVA
101: GGIDRSANPL RSALAYEVGG DSWKPLPDMA RKPFNCLGVI LRGKFHVLHR HCSEAFDPAA GSWGPVEEFV PPGEQYPTIC VTGVDGRIYR CMGREVMVQL
201: DGAVWATVAK LPSEMRVAMT AVAWEGKLMV LGLDMRNGAF VAKILDLKAT MTMTTPASAS WRNVEVPPEY QWHVEVACCL VI

Best Arabidopsis Sequence Match ( AT1G15670.1 )
(BLAST)

001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI

Arabidopsis Description

F-box/kelch-repeat protein At1g15670 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.