Factsheet for VIT_09s0002g04930.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g01510.t01
VIT_11s0016g01520.t01
VIT_11s0016g01640.t01
VIT_11s0016g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15670.1	VIT_11s0016g01510.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT2G37040.1	21798944
AT1G15670.1	VIT_11s0016g01510.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01520.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01640.t01	AT3G53260.1	21798944
AT1G15670.1	VIT_11s0016g01660.t01	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g05210.t01	Wine grape	cytosol	73.38	84.33
VIT_09s0002g08870.t01	Wine grape	cytosol	30.52	41.23
VIT_09s0002g05080.t01	Wine grape	cytosol	94.16	40.85
VIT_09s0002g05010.t01	Wine grape	cytosol, peroxisome, plastid	68.18	34.43
KRH23494	Soybean	cytosol	59.09	25.42
VIT_09s0002g08860.t01	Wine grape	cytosol	53.25	23.56
KRH47516	Soybean	cytosol	51.95	22.6
Solyc03g120320.1.1	Tomato	cytosol	51.95	22.54
PGSC0003DMT400006584	Potato	cytosol	51.95	22.54
KRH44388	Soybean	cytosol	50.65	22.1
Os02t0208700-00	Rice	cytosol	40.91	20.52
AT1G80440.1	Thale cress	cytosol	46.1	20.06
KRH09825	Soybean	cytosol	46.75	18.8
CDY39979	Canola	cytosol	43.51	18.66
Bra035183.1-P	Field mustard	cytosol	42.86	18.38
CDX87309	Canola	cytosol	42.86	18.38
Bra026116.1-P	Field mustard	cytosol	41.56	17.88
Bra026753.1-P	Field mustard	cytosol	41.56	17.88
CDY53309	Canola	cytosol	41.56	17.88
CDY36579	Canola	cytosol	41.56	17.88
CDY58028	Canola	cytosol	40.26	17.32
AT1G15670.1	Thale cress	cytosol	40.26	17.27
CDY69686	Canola	cytosol	38.96	16.81
TraesCS7B01G257400.1	Wheat	cytosol	41.56	16.62
EES06499	Sorghum	cytosol	40.26	16.62
VIT_09s0002g08880.t01	Wine grape	cytosol	33.12	16.56
TraesCS7D01G352400.1	Wheat	cytosol	40.91	16.36
Os06t0594400-02	Rice	cytosol	38.96	15.75
TraesCS6A01G178900.1	Wheat	cytosol	36.36	15.05
EER88591	Sorghum	cytosol	37.01	14.81
TraesCS6B01G206300.1	Wheat	cytosol	35.71	14.78
Zm00001d036925_P001	Maize	cytosol	36.36	14.62
GSMUA_AchrUn_...	Banana	mitochondrion	6.49	13.51
TraesCS6D01G165600.1	Wheat	cytosol	29.87	12.96
VIT_08s0007g07120.t01	Wine grape	cytosol	28.57	12.83
VIT_05s0094g01590.t01	Wine grape	cytosol	24.68	10.41

Protein Annotations

ArrayExpress:VIT_09s0002g04930	EMBL:FN596494	EnsemblPlants:VIT_09s0002g04930.t01	EnsemblPlantsGene:VIT_09s0002g04930	EntrezGene:104880304	Gene3D:2.120.10.80
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24413
PANTHER:PTHR24413:SF93	ProteinID:CCB59500	ProteinID:CCB59500.1	RefSeq:XP_019077910.1	SUPFAM:SSF117281	UniParc:UPI0002109FBC
UniProt:F6HX30	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr9:-:4516855..4517402

Molecular Weight (calculated)

17707.0 Da

IEP (calculated)

5.069

GRAVY (calculated)

-0.434

Length

154 amino acids

Sequence
(BLAST)

001: MARESDECKG VFHRGKFHVM GGYCTEMQGR FERSAEAFDF ANWEWDKAEE DFLEDSTCPR TCVDGGDMGM YMCHAGEVVT LQDSRWQTVD RLPAEIRHTA
101: YMTTWEGKLL VIGCRSFGEA HVAYMLDLKS RRWRKLVAPE EFCGHVQSGC CLEI

Best Arabidopsis Sequence Match ( AT1G80440.1 )
(BLAST)

001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV

Arabidopsis Description

F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.