Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007274_P001 | Maize | cytosol | 90.05 | 89.81 |
| EES09544 | Sorghum | cytosol | 88.17 | 85.64 |
| EES08254 | Sorghum | cytosol | 87.9 | 85.6 |
| TraesCS4B01G087600.1 | Wheat | cytosol | 80.38 | 81.25 |
| TraesCS4A01G228600.1 | Wheat | cytosol | 80.38 | 81.25 |
| TraesCS4A01G228800.1 | Wheat | cytosol | 79.84 | 80.27 |
| HORVU4Hr1G014970.1 | Barley | cytosol | 79.57 | 80.22 |
| Os11t0246200-00 | Rice | cytosol | 82.53 | 80.16 |
| TraesCS4D01G084900.1 | Wheat | cytosol | 79.03 | 79.46 |
| TraesCS4B01G087800.1 | Wheat | cytosol | 79.03 | 79.46 |
| TraesCS4D01G085000.1 | Wheat | plastid | 80.38 | 73.46 |
| Zm00001d050815_P001 | Maize | nucleus | 43.55 | 43.43 |
| GSMUA_Achr6P06940_001 | Banana | cytosol | 39.52 | 39.73 |
| GSMUA_Achr6P28790_001 | Banana | cytosol | 17.2 | 38.79 |
| Zm00001d036925_P001 | Maize | cytosol | 37.1 | 36.03 |
| PGSC0003DMT400060940 | Potato | cytosol | 31.72 | 34.4 |
| Solyc10g080610.1.1 | Tomato | cytosol | 31.18 | 33.72 |
| KRH58914 | Soybean | extracellular, plasma membrane | 34.68 | 33.51 |
| CDX83439 | Canola | cytosol | 34.95 | 33.33 |
| CDX95589 | Canola | cytosol | 34.68 | 33.08 |
| Bra000342.1-P | Field mustard | cytosol | 35.22 | 32.67 |
| CDY41196 | Canola | nucleus | 34.68 | 32.25 |
| CDY17882 | Canola | cytosol, mitochondrion, nucleus | 32.8 | 31.85 |
| CDX71859 | Canola | cytosol | 34.41 | 31.84 |
| Bra007494.1-P | Field mustard | nucleus | 35.48 | 31.43 |
| AT2G44130.1 | Thale cress | cytosol | 34.41 | 31.3 |
| CDX79780 | Canola | cytosol | 34.95 | 31.1 |
| AT3G59940.1 | Thale cress | cytosol | 34.68 | 30.86 |
| Bra004807.1-P | Field mustard | cytosol | 34.95 | 30.3 |
| VIT_05s0094g01590.t01 | Wine grape | cytosol | 29.3 | 29.86 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:100383172 | Gene3D:2.120.10.80 | MapMan:9.2.1.1.2 | ProteinID:AQK49361.1 | EMBL:BT066456 |
| UniProt:C0PDT7 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF34 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI000195C940 |
| EnsemblPlantsGene:Zm00001d049016 | EnsemblPlants:Zm00001d049016_P001 | EnsemblPlants:Zm00001d049016_T001 | SEG:seg | : | : |
Description
F-box/kelch-repeat protein SKIP20
Coordinates
chr4:-:12584214..12585332
Molecular Weight (calculated)
39572.8 Da
IEP (calculated)
7.180
GRAVY (calculated)
-0.191
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSPRGGGGL EHVDLIPGIP DDVAVDCLAR VPHASHRAMR RVCRGWRSAA AAPAFASARA AAGANEDLVY LMQFGNPSAD DGPKDGDEGP GNAPAYGVAV
101: YNVTTGEWRR ELGAPPVVPV FAQCAAVGTR LAVLGGWDPL TFEPVADVHV LDAATGRWRR GAPMRSARSF FACAEAGGRI YVAGGHDKHK NALKTAEAYD
201: AEADAWDPLP DMSEERDECD GMATVAGDRF LAVSGYRTAR QGGFERDAEW FDPAARAWRR LERVRAPPSA AHVVVRGRVW CIEGNAVMEW MGTRRGWREV
301: GPYPPGLKAG TARAVCVGGG EKVVVTGALD GVGGCGGRHA LWVFDVTSKS WTVVPPPPEF AGFVFSVASV RI
101: YNVTTGEWRR ELGAPPVVPV FAQCAAVGTR LAVLGGWDPL TFEPVADVHV LDAATGRWRR GAPMRSARSF FACAEAGGRI YVAGGHDKHK NALKTAEAYD
201: AEADAWDPLP DMSEERDECD GMATVAGDRF LAVSGYRTAR QGGFERDAEW FDPAARAWRR LERVRAPPSA AHVVVRGRVW CIEGNAVMEW MGTRRGWREV
301: GPYPPGLKAG TARAVCVGGG EKVVVTGALD GVGGCGGRHA LWVFDVTSKS WTVVPPPPEF AGFVFSVASV RI
001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
Arabidopsis Description
F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.