Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G228600.1 | Wheat | cytosol | 89.43 | 98.91 |
| TraesCS4B01G087600.1 | Wheat | cytosol | 88.45 | 97.83 |
| TraesCS4D01G084900.1 | Wheat | cytosol | 80.59 | 88.65 |
| Zm00001d049016_P001 | Maize | cytosol | 73.46 | 80.38 |
| Os11t0246200-00 | Rice | cytosol | 74.45 | 79.11 |
| EES09544 | Sorghum | cytosol | 73.96 | 78.59 |
| Zm00001d007274_P001 | Maize | cytosol | 71.99 | 78.55 |
| EES08254 | Sorghum | cytosol | 73.71 | 78.53 |
| GSMUA_Achr6P06940_001 | Banana | cytosol | 36.12 | 39.73 |
| GSMUA_Achr6P28790_001 | Banana | cytosol | 14.99 | 36.97 |
| CDX83439 | Canola | cytosol | 31.45 | 32.82 |
| CDX95589 | Canola | cytosol | 30.96 | 32.31 |
| Bra000342.1-P | Field mustard | cytosol | 31.7 | 32.17 |
| PGSC0003DMT400060940 | Potato | cytosol | 27.03 | 32.07 |
| CDY41196 | Canola | nucleus | 31.45 | 32.0 |
| TraesCS6D01G165600.1 | Wheat | cytosol | 27.76 | 31.83 |
| Solyc10g080610.1.1 | Tomato | cytosol | 26.78 | 31.69 |
| CDX71859 | Canola | cytosol | 30.96 | 31.34 |
| CDY17882 | Canola | cytosol, mitochondrion, nucleus | 29.48 | 31.33 |
| AT2G44130.1 | Thale cress | cytosol | 31.45 | 31.3 |
| Bra007494.1-P | Field mustard | nucleus | 32.19 | 31.19 |
| KRH58914 | Soybean | extracellular, plasma membrane | 29.24 | 30.91 |
| CDX79780 | Canola | cytosol | 31.7 | 30.86 |
| TraesCS7D01G352400.1 | Wheat | cytosol | 28.99 | 30.65 |
| AT3G59940.1 | Thale cress | cytosol | 31.45 | 30.62 |
| Bra004807.1-P | Field mustard | cytosol | 31.94 | 30.3 |
| VIT_05s0094g01590.t01 | Wine grape | cytosol | 26.54 | 29.59 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G085000.1 | EnsemblPlantsGene:TraesCS4D01G085000 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF34 | PFAM:PF00646 | PFAM:PF01344 | SEG:seg | SMART:SM00256 |
| SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 | MapMan:9.2.1.1.2 | : | : |
Description
No Description!
Coordinates
chr4D:+:59412226..59413449
Molecular Weight (calculated)
44134.3 Da
IEP (calculated)
7.128
GRAVY (calculated)
-0.288
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPNQYACPV APPAFYLCSL PWTERGIQKQ KQSSHKVTRM MNPKSRVQEW VADHIELIPG MPDDVAVDCL ARVPHGSYRS MRRVCRGWRS AAAAPEFALA
101: RAEAGANEDL VFLMQFGNPV AGDDGAPENT PAYGVAVYNV TTGEWHRESS APPVPMFAQC AAVGTRVAVM GGWDPKTFEP VADVNVLDAA TGVWRRGAPM
201: RSARSFFACA EAGGKIYVAG GHDKLKNALK TAEAYDAEAD GWDPLPDMSE ERDECDGMAT VAGDRFLAVS GYRTGRQGGF ERDAEWFDPA TREWRRLERV
301: RAPPSAAHVV VRGRVWCIEG TAVMEWRGER RGWLEVGPYP PGLKAGTARA VAVGGGERVV VTGAIESEGG GGGHALWVFD VKSKNWTVVR PPPQFAGFVF
401: SLASVRV
101: RAEAGANEDL VFLMQFGNPV AGDDGAPENT PAYGVAVYNV TTGEWHRESS APPVPMFAQC AAVGTRVAVM GGWDPKTFEP VADVNVLDAA TGVWRRGAPM
201: RSARSFFACA EAGGKIYVAG GHDKLKNALK TAEAYDAEAD GWDPLPDMSE ERDECDGMAT VAGDRFLAVS GYRTGRQGGF ERDAEWFDPA TREWRRLERV
301: RAPPSAAHVV VRGRVWCIEG TAVMEWRGER RGWLEVGPYP PGLKAGTARA VAVGGGERVV VTGAIESEGG GGGHALWVFD VKSKNWTVVR PPPQFAGFVF
401: SLASVRV
001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
Arabidopsis Description
F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.