Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g036480.1.1 | Tomato | peroxisome | 15.75 | 81.37 |
| TraesCS4A01G401300.1 | Wheat | cytosol, peroxisome, plastid | 98.86 | 73.07 |
| TraesCS1B01G048200.1 | Wheat | cytosol, peroxisome, plastid | 98.1 | 72.41 |
| TraesCS2D01G204400.1 | Wheat | peroxisome | 91.65 | 72.31 |
| TraesCS1D01G039400.1 | Wheat | golgi | 96.77 | 72.14 |
| CDY18464 | Canola | peroxisome | 57.69 | 71.87 |
| PGSC0003DMT400080765 | Potato | peroxisome | 59.01 | 71.49 |
| TraesCS2D01G377600.1 | Wheat | plastid | 95.26 | 70.8 |
| TraesCS2D01G377400.1 | Wheat | cytosol, peroxisome, plastid | 95.64 | 70.69 |
| TraesCS2D01G377200.1 | Wheat | cytosol, peroxisome, plastid | 95.64 | 70.69 |
| Solyc03g042560.1.1 | Tomato | peroxisome | 62.43 | 70.6 |
| TraesCS2D01G377500.1 | Wheat | cytosol, peroxisome, plastid | 95.26 | 70.41 |
| TraesCS1D01G039500.1 | Wheat | cytosol, peroxisome, plastid | 95.26 | 70.31 |
| PGSC0003DMT400055489 | Potato | mitochondrion | 51.42 | 69.31 |
| TraesCS2D01G204700.1 | Wheat | peroxisome | 92.03 | 68.6 |
| Solyc03g036470.1.1 | Tomato | mitochondrion | 29.6 | 68.12 |
| TraesCS1D01G103500.1 | Wheat | cytosol, peroxisome, plastid | 91.46 | 68.08 |
| TraesCS2D01G218700.1 | Wheat | peroxisome | 91.27 | 68.03 |
| Os04t0518400-01 | Rice | extracellular, plasma membrane | 90.32 | 66.67 |
| OQU81984 | Sorghum | peroxisome | 89.37 | 65.97 |
| Zm00001d003015_P001 | Maize | peroxisome | 88.42 | 65.17 |
| Solyc03g078270.1.1 | Tomato | endoplasmic reticulum | 17.84 | 64.83 |
| PGSC0003DMT400055529 | Potato | cytosol | 20.49 | 64.67 |
| CDX99621 | Canola | mitochondrion | 66.98 | 64.53 |
| TraesCS6D01G212500.1 | Wheat | peroxisome | 87.1 | 64.47 |
| TraesCS6D01G212400.1 | Wheat | cytosol, peroxisome, plastid | 87.29 | 64.43 |
| Solyc03g071860.2.1 | Tomato | endoplasmic reticulum | 44.59 | 64.38 |
| Solyc03g078280.1.1 | Tomato | peroxisome | 30.74 | 62.79 |
| CDX67566 | Canola | cytosol | 54.27 | 58.25 |
| KRH34854 | Soybean | cytosol, endoplasmic reticulum, peroxisome | 75.52 | 57.93 |
| CDX78161 | Canola | cytosol | 54.46 | 57.86 |
| CDX73567 | Canola | cytosol | 54.46 | 57.86 |
| PGSC0003DMT400049886 | Potato | nucleus, peroxisome, plastid | 75.33 | 57.62 |
| Bra003126.1-P | Field mustard | cytosol | 76.85 | 57.28 |
| Bra017210.1-P | Field mustard | cytosol, peroxisome, plastid | 78.18 | 57.06 |
| Solyc10g086180.1.1 | Tomato | extracellular | 76.85 | 56.96 |
| PGSC0003DMT400080548 | Potato | cytosol, peroxisome, plastid | 76.85 | 56.96 |
| Solyc09g007920.2.1 | Tomato | extracellular, nucleus | 77.42 | 56.59 |
| PGSC0003DMT400055488 | Potato | cytosol, peroxisome, plastid | 77.42 | 56.51 |
| AT3G53260.1 | Thale cress | cytosol | 76.85 | 56.49 |
| Solyc09g007900.2.1 | Tomato | cytosol, endoplasmic reticulum, peroxisome | 77.23 | 56.45 |
| AT3G10340.1 | Thale cress | peroxisome | 75.71 | 56.44 |
| Solyc09g007910.2.1 | Tomato | extracellular, nucleus | 77.04 | 56.31 |
| Bra006985.1-P | Field mustard | cytosol | 75.14 | 56.09 |
| CDY66761 | Canola | cytosol, peroxisome, plastid | 55.22 | 56.07 |
| AT2G37040.1 | Thale cress | cytosol, peroxisome, plastid | 77.04 | 56.0 |
| Bra029831.1-P | Field mustard | cytosol | 74.95 | 55.95 |
| TraesCS6D01G212200.1 | Wheat | extracellular, golgi, unclear | 74.57 | 55.82 |
| PGSC0003DMT400055531 | Potato | cytosol, peroxisome, plastid | 76.09 | 55.77 |
| CDY08611 | Canola | cytosol | 74.57 | 55.67 |
| CDY00922 | Canola | cytosol | 74.57 | 55.67 |
| CDX76219 | Canola | cytosol | 55.03 | 55.56 |
| KRG91925 | Soybean | cytosol, peroxisome, plastid | 75.52 | 55.51 |
| Solyc09g007890.1.1 | Tomato | plastid | 75.14 | 55.08 |
| Bra039777.1-P | Field mustard | peroxisome | 52.94 | 54.71 |
| AT5G04230.2 | Thale cress | peroxisome | 70.4 | 53.15 |
| TraesCS3D01G016300.1 | Wheat | peroxisome | 68.88 | 52.69 |
| TraesCS3D01G016500.1 | Wheat | peroxisome | 66.79 | 51.09 |
| CDY15917 | Canola | cytosol, peroxisome, plastid | 67.36 | 50.86 |
| Bra030322.1-P | Field mustard | cytosol, peroxisome, plastid | 67.17 | 50.72 |
| GSMUA_Achr9P15990_001 | Banana | peroxisome | 60.72 | 45.52 |
| VIT_11s0016g01640.t01 | Wine grape | peroxisome | 54.46 | 43.16 |
| VIT_11s0016g01660.t01 | Wine grape | peroxisome | 13.09 | 39.66 |
| VIT_11s0016g01520.t01 | Wine grape | peroxisome | 65.46 | 38.55 |
| Bra005221.1-P | Field mustard | peroxisome | 26.19 | 37.2 |
| CDX91331 | Canola | peroxisome | 26.19 | 36.32 |
| CDX74991 | Canola | peroxisome | 26.19 | 36.32 |
| Bra028793.1-P | Field mustard | peroxisome | 16.7 | 29.93 |
| CDY61769 | Canola | peroxisome | 12.9 | 26.88 |
| CDY18463 | Canola | peroxisome | 13.09 | 26.24 |
| CDY13306 | Canola | peroxisome | 9.3 | 23.33 |
| Solyc03g071870.1.1 | Tomato | peroxisome | 3.42 | 10.47 |
| VIT_11s0016g01510.t01 | Wine grape | peroxisome | 5.31 | 7.89 |
| Solyc10g011930.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc10g011920.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| KEGG:00360+4.3.1.24 | KEGG:00940+4.3.1.24 | Gene3D:1.10.274.20 | Gene3D:1.10.275.10 | Gene3D:1.20.200.10 | MapMan:9.2.1.1.1 |
| InterPro:Aromatic_Lyase | InterPro:Fumarase/histidase_N | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006559 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016841 | InterPro:IPR023144 | InterPro:IPR024083 | InterPro:L-Aspartase-like | PFAM:PF00221 |
| ScanProsite:PS00488 | PANTHER:PTHR10362 | PANTHER:PTHR10362:SF9 | InterPro:Phe/His_NH3-lyase_AS | InterPro:Phe_NH3-lyase | InterPro:Phe_NH3-lyase_shielding_dom_sf |
| SUPFAM:SSF48557 | TIGRFAMs:TIGR01226 | EnsemblPlantsGene:TraesCS1D01G039300 | EnsemblPlants:TraesCS1D01G039300.1 | TIGR:cd00332 | : |
Description
No Description!
Coordinates
chr1D:-:19000219..19001892
Molecular Weight (calculated)
57378.1 Da
IEP (calculated)
6.125
GRAVY (calculated)
-0.079
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVRVNTLLQ GYSGIRFEIL ETVAALLNAN VTPCLPLRGT ITASGDLVPL SYIAGLVTGR ANSVATAPDG SKVNAAEAFK IAGIQHGFFE LQPKEGLAMV
101: NGTAVGSGLA SMVLFEANIL SLLAEVLSAV FCEVMNGKPE YTDHLTHKLK HHPGQIEAAA IMEHILEGSS YMALAKKLGE LDPLMKPKQD RYALRTSPQW
201: LGPQIEVIRA ATKSIEREIN SVNDNPLIDV SRGKAIHGGN FQGTPIGVSM DNTRLAIAAI GKLMFAQFSE LVNDLYNNGL PSNLSGGRNP SLDYGFKGAE
301: IAMASYCSEL QFLGNPVTNH LMSSTFMVAL CQAIDLRHLE ENVKDAVKSC VKMTARKTLS TTNNGHLHNA RFCEKDLLLT IDREAVFAYA DDPCSANYPL
401: MQKMRAVLVE HALANGEAEH DMETSVFAKL AAFEQELRAV LPKEVEAARS SVENGTATQH NRITGCRSYP LYRFVRKELG TEYLTGEKTR SPGEEVDKVF
501: VAMNQGKHID ALLECLEEWN GEPLPLC
101: NGTAVGSGLA SMVLFEANIL SLLAEVLSAV FCEVMNGKPE YTDHLTHKLK HHPGQIEAAA IMEHILEGSS YMALAKKLGE LDPLMKPKQD RYALRTSPQW
201: LGPQIEVIRA ATKSIEREIN SVNDNPLIDV SRGKAIHGGN FQGTPIGVSM DNTRLAIAAI GKLMFAQFSE LVNDLYNNGL PSNLSGGRNP SLDYGFKGAE
301: IAMASYCSEL QFLGNPVTNH LMSSTFMVAL CQAIDLRHLE ENVKDAVKSC VKMTARKTLS TTNNGHLHNA RFCEKDLLLT IDREAVFAYA DDPCSANYPL
401: MQKMRAVLVE HALANGEAEH DMETSVFAKL AAFEQELRAV LPKEVEAARS SVENGTATQH NRITGCRSYP LYRFVRKELG TEYLTGEKTR SPGEEVDKVF
501: VAMNQGKHID ALLECLEEWN GEPLPLC
001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
Arabidopsis Description
PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.