Factsheet for Os04t0518400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 21255809
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21255809 doi

T Shinano, S Komatsu, T Yoshimura, S Tokutake, FJ Kong, T Watanabe, J Wasaki, M Osaki

National Agriculture and Food Research Organization, National Agricultural Research Center for Hokkaido Region, 1-Hitsujigaoka, Toyohira-ku, Sapporo 062-8555, Japan. shinano@affrc.go.jp

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0208700-00
Os02t0626100-01
Os02t0626400-01
Os02t0626600-00
Os02t0627100-01
Os04t0518100-01
Os04t0518400-01
Os05t0427400-00
Os06t0594400-02
Os08t0308300-00
Os12t0461300-00
Os12t0520200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	Os02t0626100-01	AT2G37040.1	21798944
AT2G37040.1	Os02t0626400-01	AT2G37040.1	21798944
AT2G37040.1	Os02t0626600-00	AT2G37040.1	21798944
AT2G37040.1	Os02t0627100-01	AT2G37040.1	21798944
AT2G37040.1	Os04t0518100-01	AT2G37040.1	21798944
AT2G37040.1	Os04t0518400-01	AT2G37040.1	21798944
AT2G37040.1	Os05t0427400-00	AT2G37040.1	21798944
AT2G37040.1	Os08t0308300-00	AT2G37040.1	21798944
AT2G37040.1	Os12t0461300-00	AT2G37040.1	21798944
AT2G37040.1	Os12t0520200-01	AT2G37040.1	21798944
AT2G37040.1	Os02t0626100-01	AT3G10340.1	21798944
AT2G37040.1	Os02t0626400-01	AT3G10340.1	21798944
AT2G37040.1	Os02t0626600-00	AT3G10340.1	21798944
AT2G37040.1	Os02t0627100-01	AT3G10340.1	21798944
AT2G37040.1	Os04t0518100-01	AT3G10340.1	21798944
AT2G37040.1	Os04t0518400-01	AT3G10340.1	21798944
AT2G37040.1	Os05t0427400-00	AT3G10340.1	21798944
AT2G37040.1	Os08t0308300-00	AT3G10340.1	21798944
AT2G37040.1	Os12t0461300-00	AT3G10340.1	21798944
AT2G37040.1	Os12t0520200-01	AT3G10340.1	21798944
AT3G10340.1	Os02t0208700-00	AT1G15670.1	21798944
AT3G10340.1	Os06t0594400-02	AT1G15670.1	21798944
AT3G53260.1	Os02t0626100-01	AT3G10340.1	21798944
AT3G53260.1	Os02t0626400-01	AT3G10340.1	21798944
AT3G53260.1	Os02t0626600-00	AT3G10340.1	21798944
AT3G53260.1	Os02t0627100-01	AT3G10340.1	21798944
AT3G53260.1	Os04t0518100-01	AT3G10340.1	21798944
AT3G53260.1	Os04t0518400-01	AT3G10340.1	21798944
AT3G53260.1	Os05t0427400-00	AT3G10340.1	21798944
AT3G53260.1	Os08t0308300-00	AT3G10340.1	21798944
AT3G53260.1	Os12t0461300-00	AT3G10340.1	21798944
AT3G53260.1	Os12t0520200-01	AT3G10340.1	21798944
AT3G53260.1	Os02t0626100-01	AT3G53260.1	21798944
AT3G53260.1	Os02t0626400-01	AT3G53260.1	21798944
AT3G53260.1	Os02t0626600-00	AT3G53260.1	21798944
AT3G53260.1	Os02t0627100-01	AT3G53260.1	21798944
AT3G53260.1	Os04t0518100-01	AT3G53260.1	21798944
AT3G53260.1	Os04t0518400-01	AT3G53260.1	21798944
AT3G53260.1	Os05t0427400-00	AT3G53260.1	21798944
AT3G53260.1	Os08t0308300-00	AT3G53260.1	21798944
AT3G53260.1	Os12t0461300-00	AT3G53260.1	21798944
AT3G53260.1	Os12t0520200-01	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G094900.1	Wheat	cytosol, peroxisome, plastid	65.55	93.98
OQU81984	Sorghum	peroxisome	93.0	93.0
HORVU2Hr1G089540.1	Barley	peroxisome	60.78	92.54
TraesCS2D01G377200.1	Wheat	cytosol, peroxisome, plastid	92.16	92.29
TraesCS2A01G381000.1	Wheat	plastid	92.02	92.15
TraesCS2B01G224000.1	Wheat	peroxisome	91.18	92.08
TraesCS2D01G204400.1	Wheat	peroxisome	86.13	92.07
TraesCS2B01G398000.2	Wheat	plastid	91.88	92.01
TraesCS2D01G377400.1	Wheat	cytosol, peroxisome, plastid	91.88	92.01
TraesCS2A01G381100.1	Wheat	plastid	91.74	91.87
TraesCS2D01G377500.1	Wheat	cytosol, peroxisome, plastid	91.74	91.87
TraesCS2D01G377600.1	Wheat	plastid	91.18	91.82
TraesCS1B01G122800.1	Wheat	cytosol, peroxisome, plastid	91.04	91.81
HORVU1Hr1G022060.1	Barley	cytosol, peroxisome, plastid	90.9	91.8
TraesCS2D01G204700.1	Wheat	peroxisome	90.9	91.8
Zm00001d003015_P001	Maize	peroxisome	91.88	91.75
TraesCS2A01G380800.1	Wheat	cytosol, peroxisome, plastid	91.6	91.73
TraesCS2B01G398400.1	Wheat	cytosol, peroxisome, plastid	91.6	91.73
TraesCS1D01G103500.1	Wheat	cytosol, peroxisome, plastid	90.9	91.67
TraesCS2D01G218700.1	Wheat	peroxisome	90.76	91.65
TraesCS2A01G380900.1	Wheat	cytosol, peroxisome, plastid	91.46	91.58
HORVU2Hr1G038120.1	Barley	cytosol, peroxisome, plastid	90.48	91.37
TraesCS2B01G224300.1	Wheat	cytosol, peroxisome, plastid	90.34	91.36
TraesCS2B01G398200.1	Wheat	cytosol, peroxisome, plastid	91.04	91.16
TraesCS2A01G212900.1	Wheat	cytosol, peroxisome, plastid	90.2	91.09
TraesCS2A01G196700.1	Wheat	peroxisome	90.06	90.95
TraesCS2B01G398100.1	Wheat	cytosol, peroxisome, plastid	66.11	90.77
TraesCS4A01G401300.1	Wheat	cytosol, peroxisome, plastid	90.34	90.46
TraesCS1B01G048400.2	Wheat	cytosol, peroxisome, plastid	89.5	90.38
TraesCS1D01G039400.1	Wheat	golgi	89.5	90.38
TraesCS1B01G048100.1	Wheat	cytosol, peroxisome, plastid	90.34	90.34
TraesCS1D01G039500.1	Wheat	cytosol, peroxisome, plastid	90.34	90.34
TraesCS1D01G039300.1	Wheat	mitochondrion	66.67	90.32
TraesCS1A01G037800.1	Wheat	cytosol, peroxisome, plastid	90.2	90.2
TraesCS1B01G048200.1	Wheat	cytosol, peroxisome, plastid	90.2	90.2
TraesCS1B01G048500.1	Wheat	cytosol, peroxisome, plastid	90.2	90.2
TraesCS1B01G048300.1	Wheat	cytosol, peroxisome, plastid	89.92	90.04
TraesCS5B01G468400.1	Wheat	peroxisome	69.47	89.86
TraesCS5B01G468300.1	Wheat	cytosol, peroxisome, plastid	88.94	89.82
Os02t0627100-01	Rice	plasma membrane	89.64	89.76
TraesCS1A01G037700.1	Wheat	cytosol, peroxisome, plastid	88.66	89.53
TraesCS2B01G398300.2	Wheat	peroxisome	45.94	89.13
Os05t0427400-00	Rice	cytosol, peroxisome, plastid	89.22	88.97
Os02t0626400-01	Rice	mitochondrion, plasma membrane	88.38	87.88
TraesCS2A01G196400.1	Wheat	mitochondrion, plastid	81.93	87.57
TraesCS2B01G020100.1	Wheat	peroxisome	82.35	86.34
HORVU2Hr1G089440.9	Barley	plasma membrane	92.44	86.05
HORVU2Hr1G038140.1	Barley	mitochondrion, plastid	86.13	85.06
TraesCS2A01G212600.1	Wheat	cytosol	31.37	84.53
Os02t0626600-00	Rice	plasma membrane	84.45	84.34
Solyc03g036480.1.1	Tomato	peroxisome	11.76	82.35
CDY18464	Canola	peroxisome	46.5	78.49
PGSC0003DMT400080765	Potato	peroxisome	47.62	78.16
Solyc03g036470.1.1	Tomato	mitochondrion	24.79	77.29
Solyc03g042560.1.1	Tomato	peroxisome	50.42	77.25
PGSC0003DMT400055489	Potato	mitochondrion	42.3	77.24
CDX67566	Canola	cytosol	53.08	77.19
CDX78161	Canola	cytosol	53.5	77.02
CDX73567	Canola	cytosol	53.36	76.81
Os04t0518100-01	Rice	plasma membrane	76.05	76.8
Os12t0520200-01	Rice	plasma membrane	72.97	76.62
Os02t0626100-01	Rice	extracellular, plasma membrane	75.21	76.6
Solyc10g086180.1.1	Tomato	extracellular	76.05	76.37
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	73.39	76.27
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	75.63	75.95
CDY66761	Canola	cytosol, peroxisome, plastid	55.18	75.92
Bra003126.1-P	Field mustard	cytosol	74.93	75.67
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	76.33	75.59
Solyc09g007920.2.1	Tomato	extracellular, nucleus	76.19	75.45
AT3G10340.1	Thale cress	peroxisome	74.51	75.25
CDX76219	Canola	cytosol	54.9	75.1
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	75.91	75.07
Solyc09g007910.2.1	Tomato	extracellular, nucleus	75.63	74.9
KRG91925	Soybean	cytosol, peroxisome, plastid	75.21	74.9
Bra029831.1-P	Field mustard	cytosol	73.95	74.79
CDY08611	Canola	cytosol	73.95	74.79
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	75.49	74.65
AT3G53260.1	Thale cress	cytosol	74.93	74.62
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	74.93	74.41
Bra006985.1-P	Field mustard	cytosol	73.53	74.36
CDY00922	Canola	cytosol	73.53	74.36
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	75.21	74.07
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	71.43	74.02
Solyc09g007890.1.1	Tomato	plastid	74.09	73.57
Solyc03g078280.1.1	Tomato	peroxisome	26.33	72.87
Bra039777.1-P	Field mustard	peroxisome	51.68	72.35
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	36.97	72.33
CDX99621	Canola	mitochondrion	54.06	70.57
AT5G04230.2	Thale cress	peroxisome	67.51	69.05
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	14.01	68.97
CDY13306	Canola	peroxisome	19.89	67.62
CDY15917	Canola	cytosol, peroxisome, plastid	65.97	67.48
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	65.83	67.34
PGSC0003DMT400055529	Potato	cytosol	15.69	67.07
Bra005221.1-P	Field mustard	peroxisome	34.59	66.58
CDY18463	Canola	peroxisome	23.81	64.64
CDX74991	Canola	peroxisome	34.31	64.47
CDX91331	Canola	peroxisome	34.31	64.47
Os12t0461300-00	Rice	plastid	21.85	61.66
Solyc03g071870.1.1	Tomato	peroxisome	14.15	58.72
VIT_11s0016g01640.t01	Wine grape	peroxisome	54.48	58.5
GSMUA_Achr9P15990_001	Banana	peroxisome	55.88	56.76
Solyc10g011920.1.1	Tomato	cytosol	9.8	55.12
Solyc10g011930.1.1	Tomato	cytosol	9.8	55.12
Os08t0308300-00	Rice	plastid	13.87	52.66
Bra028793.1-P	Field mustard	peroxisome	21.57	52.38
CDY61769	Canola	peroxisome	18.35	51.78
VIT_11s0016g01520.t01	Wine grape	peroxisome	62.18	49.61
VIT_11s0016g01660.t01	Wine grape	peroxisome	11.76	48.28
VIT_11s0016g01510.t01	Wine grape	peroxisome	14.43	29.01

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:4336415
MapMan:9.2.1.1.1	EMBL:AK067801	InterPro:Aromatic_Lyase	ProteinID:BAF15240.1	ProteinID:BAS90104.1	ProteinID:CAE05458.3
ProteinID:CAE05623.1	ProteinID:EEE64221.1	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829
GO:GO:0016841	GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like
EnsemblPlantsGene:Os04g0518400	EnsemblPlants:Os04t0518400-01	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF9
InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	UniProt:Q7X8V3	SUPFAM:SSF48557	TIGRFAMs:TIGR01226
UniParc:UPI00001A53F3	RefSeq:XP_015633749.1	SEG:seg	:	:	:

Description

Phenylalanine ammonia-lyase 07Similar to Phenylalanine ammonia-lyase (Fragment). (Os04t0518400-01)

Coordinates

chr4:-:25927077..25929716

Molecular Weight (calculated)

76942.2 Da

IEP (calculated)

6.281

GRAVY (calculated)

-0.102

Length

714 amino acids

Sequence
(BLAST)

001: MECENGHVAA AANGSSLCVA KPRADPLNWG KAAEELSGSH LDAVKRMVEE YRRPVVTIEG ASLTIAQVAA VASAGAARVE LDESARGRVK ASSDWVMNSM
101: MNGTDSYGVT TGFGATSHRR TKEGGALQRE LIRFLNAGAF GNGDDGHVLP AAATRAAMLV RINTLLQGYS GIRFEILETI ATLLNANVTP CLPLRGTITA
201: SGDLVPLSYI AGLVTGRPNS VAVTPDGRKV DAAEAFKIAG IQHGFFELQP KEGLAMVNGT AVGSGLASMV LFEANVLGVL AEVLSAVFCE VMNGKPEYTD
301: HLTHKLKHHP GQIEAAAIME HILEGSSYMM LAKKLGELDP LMKPKQDRYA LRTSPQWLGP QIEVIRAATK SIEREINSVN DNPLIDVSRG KALHGGNFQG
401: TPIGVSMDNT RLAIAAIGKL MFAQFSELVN DFYNNGLPSN LSGGRNPSLD YGFKGAEIAM ASYCSELQFL ANPVTNHVQS AEQHNQDVNS LGLISSRKTA
501: EAIDVLKLMS STFLIALCQA IDLRHLEENV RSAVKGCVTT VARKTLSTSA TGDLHKARFC EKDLLQAIDR EAVFAYADDP CSANYPLMQK MRAVLIEHAL
601: ANGEAERNVD TSVFAKVATF EEELRVALPR EVEAARAAVE NGTAAKANRI TECRSYPLYR FVREELGTEY LTGEKTRSPG EEVNKVFVAM NQGKHIDALL
701: ECLKEWNGEP LPIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.