Factsheet for Os02t0626100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 18372294
plasma membrane: 18557835
extracellular: 24083427
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0208700-00
Os02t0626100-01
Os02t0626400-01
Os02t0626600-00
Os02t0627100-01
Os04t0518100-01
Os04t0518400-01
Os05t0427400-00
Os06t0594400-02
Os08t0308300-00
Os12t0461300-00
Os12t0520200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	Os02t0626100-01	AT2G37040.1	21798944
AT2G37040.1	Os02t0626400-01	AT2G37040.1	21798944
AT2G37040.1	Os02t0626600-00	AT2G37040.1	21798944
AT2G37040.1	Os02t0627100-01	AT2G37040.1	21798944
AT2G37040.1	Os04t0518100-01	AT2G37040.1	21798944
AT2G37040.1	Os04t0518400-01	AT2G37040.1	21798944
AT2G37040.1	Os05t0427400-00	AT2G37040.1	21798944
AT2G37040.1	Os08t0308300-00	AT2G37040.1	21798944
AT2G37040.1	Os12t0461300-00	AT2G37040.1	21798944
AT2G37040.1	Os12t0520200-01	AT2G37040.1	21798944
AT2G37040.1	Os02t0626100-01	AT3G10340.1	21798944
AT2G37040.1	Os02t0626400-01	AT3G10340.1	21798944
AT2G37040.1	Os02t0626600-00	AT3G10340.1	21798944
AT2G37040.1	Os02t0627100-01	AT3G10340.1	21798944
AT2G37040.1	Os04t0518100-01	AT3G10340.1	21798944
AT2G37040.1	Os04t0518400-01	AT3G10340.1	21798944
AT2G37040.1	Os05t0427400-00	AT3G10340.1	21798944
AT2G37040.1	Os08t0308300-00	AT3G10340.1	21798944
AT2G37040.1	Os12t0461300-00	AT3G10340.1	21798944
AT2G37040.1	Os12t0520200-01	AT3G10340.1	21798944
AT3G10340.1	Os02t0208700-00	AT1G15670.1	21798944
AT3G10340.1	Os06t0594400-02	AT1G15670.1	21798944
AT3G53260.1	Os02t0626100-01	AT3G10340.1	21798944
AT3G53260.1	Os02t0626400-01	AT3G10340.1	21798944
AT3G53260.1	Os02t0626600-00	AT3G10340.1	21798944
AT3G53260.1	Os02t0627100-01	AT3G10340.1	21798944
AT3G53260.1	Os04t0518100-01	AT3G10340.1	21798944
AT3G53260.1	Os04t0518400-01	AT3G10340.1	21798944
AT3G53260.1	Os05t0427400-00	AT3G10340.1	21798944
AT3G53260.1	Os08t0308300-00	AT3G10340.1	21798944
AT3G53260.1	Os12t0461300-00	AT3G10340.1	21798944
AT3G53260.1	Os12t0520200-01	AT3G10340.1	21798944
AT3G53260.1	Os02t0626100-01	AT3G53260.1	21798944
AT3G53260.1	Os02t0626400-01	AT3G53260.1	21798944
AT3G53260.1	Os02t0626600-00	AT3G53260.1	21798944
AT3G53260.1	Os02t0627100-01	AT3G53260.1	21798944
AT3G53260.1	Os04t0518100-01	AT3G53260.1	21798944
AT3G53260.1	Os04t0518400-01	AT3G53260.1	21798944
AT3G53260.1	Os05t0427400-00	AT3G53260.1	21798944
AT3G53260.1	Os08t0308300-00	AT3G53260.1	21798944
AT3G53260.1	Os12t0461300-00	AT3G53260.1	21798944
AT3G53260.1	Os12t0520200-01	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051161_P003	Maize	plastid	91.58	91.32
EES07174	Sorghum	cytosol, peroxisome, plastid	91.01	90.62
Zm00001d017274_P001	Maize	plasma membrane	90.87	90.61
TraesCS6D01G212200.1	Wheat	extracellular, golgi, unclear	90.58	90.2
TraesCS6A01G222900.1	Wheat	extracellular, golgi, unclear	90.58	90.2
TraesCS6B01G258400.2	Wheat	cytosol, peroxisome, plastid	90.44	90.06
Os04t0518100-01	Rice	plasma membrane	87.87	87.13
TraesCS3B01G027800.1	Wheat	mitochondrion	63.91	82.35
TraesCS3A01G029200.1	Wheat	peroxisome	79.74	81.13
TraesCS3D01G016300.1	Wheat	peroxisome	79.32	80.7
TraesCS3B01G053900.1	Wheat	peroxisome	79.03	80.41
HORVU3Hr1G005330.2	Barley	cytosol, peroxisome, plasma membrane	79.03	80.29
HORVU6Hr1G058820.2	Barley	mitochondrion	80.46	79.55
TraesCS3D01G016500.1	Wheat	peroxisome	78.03	79.39
TraesCSU01G030700.1	Wheat	peroxisome	75.75	78.2
Os02t0627100-01	Rice	plasma membrane	77.18	75.88
Os04t0518400-01	Rice	extracellular, plasma membrane	76.6	75.21
Os05t0427400-00	Rice	cytosol, peroxisome, plastid	76.6	75.0
Os02t0626400-01	Rice	mitochondrion, plasma membrane	76.75	74.93
Solyc03g036480.1.1	Tomato	peroxisome	10.84	74.51
Solyc03g036470.1.1	Tomato	mitochondrion	24.25	74.24
CDY18464	Canola	peroxisome	44.65	74.0
PGSC0003DMT400080765	Potato	peroxisome	45.22	72.87
Solyc03g042560.1.1	Tomato	peroxisome	48.07	72.32
Solyc10g086180.1.1	Tomato	extracellular	72.47	71.45
AT3G10340.1	Thale cress	peroxisome	72.04	71.43
Os02t0626600-00	Rice	plasma membrane	72.75	71.33
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	72.18	71.17
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	69.61	71.03
PGSC0003DMT400055489	Potato	mitochondrion	39.52	70.84
CDX67566	Canola	cytosol	49.22	70.26
KRG91925	Soybean	cytosol, peroxisome, plastid	71.33	69.73
CDX78161	Canola	cytosol	49.22	69.56
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	71.61	69.53
Os12t0520200-01	Rice	plasma membrane	67.33	69.41
CDY00922	Canola	cytosol	69.9	69.41
CDX73567	Canola	cytosol	49.07	69.35
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	68.05	69.23
AT3G53260.1	Thale cress	cytosol	70.76	69.18
Bra003126.1-P	Field mustard	cytosol	69.76	69.17
Bra029831.1-P	Field mustard	cytosol	69.61	69.12
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	71.18	69.11
Solyc03g078280.1.1	Tomato	peroxisome	25.39	68.99
CDY08611	Canola	cytosol	69.47	68.98
CDY66761	Canola	cytosol, peroxisome, plastid	51.07	68.98
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	71.33	68.97
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	70.61	68.85
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	70.76	68.79
Solyc09g007920.2.1	Tomato	extracellular, nucleus	70.61	68.65
CDX99621	Canola	mitochondrion	53.49	68.56
Solyc09g007910.2.1	Tomato	extracellular, nucleus	70.19	68.24
CDX76219	Canola	cytosol	50.78	68.2
Bra006985.1-P	Field mustard	cytosol	68.47	67.99
Solyc09g007890.1.1	Tomato	plastid	68.33	66.62
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	34.52	66.3
Bra039777.1-P	Field mustard	peroxisome	47.93	65.88
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	13.55	65.52
AT5G04230.2	Thale cress	peroxisome	65.05	65.33
CDY15917	Canola	cytosol, peroxisome, plastid	64.76	65.04
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	64.62	64.9
Bra005221.1-P	Field mustard	peroxisome	32.52	61.46
CDY18463	Canola	peroxisome	22.4	59.7
CDY13306	Canola	peroxisome	17.83	59.52
CDX74991	Canola	peroxisome	32.24	59.47
CDX91331	Canola	peroxisome	32.24	59.47
PGSC0003DMT400055529	Potato	cytosol	13.41	56.29
VIT_11s0016g01640.t01	Wine grape	peroxisome	53.07	55.94
GSMUA_Achr9P15990_001	Banana	peroxisome	55.35	55.19
Solyc10g011920.1.1	Tomato	cytosol	9.27	51.18
Solyc10g011930.1.1	Tomato	cytosol	9.27	51.18
Solyc03g071870.1.1	Tomato	peroxisome	12.55	51.16
CDY61769	Canola	peroxisome	18.12	50.2
Bra028793.1-P	Field mustard	peroxisome	20.97	50.0
VIT_11s0016g01660.t01	Wine grape	peroxisome	12.41	50.0
VIT_11s0016g01520.t01	Wine grape	peroxisome	60.63	47.49
Os12t0461300-00	Rice	plastid	16.83	46.64
Os08t0308300-00	Rice	plastid	10.41	38.83
VIT_11s0016g01510.t01	Wine grape	peroxisome	13.27	26.2

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:4330034
MapMan:9.2.1.1.1	EMBL:AK102817	InterPro:Aromatic_Lyase	ProteinID:BAD23149.1	ProteinID:BAD23794.1	ProteinID:BAF09395.1
ProteinID:BAS79861.1	ProteinID:BAS79862.1	ProteinID:BAS79863.1	ProteinID:CAA34226.1	ProteinID:EAZ23873.1	InterPro:Fumarase/histidase_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009698
GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841	GO:GO:0019748	GO:GO:0045548
InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	EnsemblPlantsGene:Os02g0626100	EnsemblPlants:Os02t0626100-01	UniProt:P14717
PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF11	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase
InterPro:Phe_NH3-lyase_shielding_dom_sf	SUPFAM:SSF48557	TIGRFAMs:TIGR01226	UniParc:UPI00003B0554	RefSeq:XP_015625120.1	SEG:seg

Description

PHENYLALANINE AMMONIA-LYASE 1Similar to Phenylalanine ammonia-lyase. (Os02t0626100-01);Similar to Phenylalanine ammonia-lyase. (Os02t0626100-02);Similar to Phenylalanine ammonia-lyase. (Os02t0626100-03);Non-protein coding transcript. (Os02t0626100-04)

Coordinates

chr2:-:24973450..24977287

Molecular Weight (calculated)

75502.7 Da

IEP (calculated)

6.468

GRAVY (calculated)

-0.075

Length

701 amino acids

Sequence
(BLAST)

001: MAGNGPINKE DPLNWGAAAA EMAGSHLDEV KRMVAQFREP LVKIQGATLR VGQVAAVAQA KDAAGVAVEL DEEARPRVKA SSEWILNCIA HGGDIYGVTT
101: GFGGTSHRRT KDGPALQVEL LRHLNAGIFG TGSDGHTLPS ETVRAAMLVR INTLLQGYSG IRFEILEAIT KLLNTGVTPC LPLRGTITAS GDLVPLSYIA
201: GLITGRPNAQ AISPDGRKVD AAEAFKLAGI EGGFFTLNPK EGLAIVNGTS VGSALAATVM FDANILAVLS EVLSAVFCEV MNGKPEYTDH LTHKLKHHPG
301: SIEAAAIMEH ILAGSSFMSH AKKVNEMDPL LKPKQDRYAL RTSPQWLGPQ IEVIRAATKS IEREVNSVND NPVIDVHRGK ALHGGNFQGT PIGVSMDNAR
401: LAIANIGKLM FAQFSELVNE FYNNGLTSNL AGSRNPSLDY GFKGTEIAMA SYCSELQYLA NPITNHVQSA EQHNQDVNSL GLVSARKTLE AVDILKLMTS
501: TYIVALCQAV DLRHLEENIK SSVKNCVTQV AKKVLTMNPT GDLSSARFSE KNLLTAIDRE AVFSYADDPC SANYPLMQKL RAVLVEHALT SGDAEPEASV
601: FSKITKFEEE LRSALPREIE AARVAVANGT APVANRIVES RSFPLYRFVR EELGCVFLTG EKLKSPGEEC NKVFLGISQG KLIDPMLDCL KEWNGEPLPI
701: N

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.