Factsheet for Os02t0627100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0208700-00
Os02t0626100-01
Os02t0626400-01
Os02t0626600-00
Os02t0627100-01
Os04t0518100-01
Os04t0518400-01
Os05t0427400-00
Os06t0594400-02
Os08t0308300-00
Os12t0461300-00
Os12t0520200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	Os02t0626100-01	AT2G37040.1	21798944
AT2G37040.1	Os02t0626400-01	AT2G37040.1	21798944
AT2G37040.1	Os02t0626600-00	AT2G37040.1	21798944
AT2G37040.1	Os02t0627100-01	AT2G37040.1	21798944
AT2G37040.1	Os04t0518100-01	AT2G37040.1	21798944
AT2G37040.1	Os04t0518400-01	AT2G37040.1	21798944
AT2G37040.1	Os05t0427400-00	AT2G37040.1	21798944
AT2G37040.1	Os08t0308300-00	AT2G37040.1	21798944
AT2G37040.1	Os12t0461300-00	AT2G37040.1	21798944
AT2G37040.1	Os12t0520200-01	AT2G37040.1	21798944
AT2G37040.1	Os02t0626100-01	AT3G10340.1	21798944
AT2G37040.1	Os02t0626400-01	AT3G10340.1	21798944
AT2G37040.1	Os02t0626600-00	AT3G10340.1	21798944
AT2G37040.1	Os02t0627100-01	AT3G10340.1	21798944
AT2G37040.1	Os04t0518100-01	AT3G10340.1	21798944
AT2G37040.1	Os04t0518400-01	AT3G10340.1	21798944
AT2G37040.1	Os05t0427400-00	AT3G10340.1	21798944
AT2G37040.1	Os08t0308300-00	AT3G10340.1	21798944
AT2G37040.1	Os12t0461300-00	AT3G10340.1	21798944
AT2G37040.1	Os12t0520200-01	AT3G10340.1	21798944
AT3G10340.1	Os02t0208700-00	AT1G15670.1	21798944
AT3G10340.1	Os06t0594400-02	AT1G15670.1	21798944
AT3G53260.1	Os02t0626100-01	AT3G10340.1	21798944
AT3G53260.1	Os02t0626400-01	AT3G10340.1	21798944
AT3G53260.1	Os02t0626600-00	AT3G10340.1	21798944
AT3G53260.1	Os02t0627100-01	AT3G10340.1	21798944
AT3G53260.1	Os04t0518100-01	AT3G10340.1	21798944
AT3G53260.1	Os04t0518400-01	AT3G10340.1	21798944
AT3G53260.1	Os05t0427400-00	AT3G10340.1	21798944
AT3G53260.1	Os08t0308300-00	AT3G10340.1	21798944
AT3G53260.1	Os12t0461300-00	AT3G10340.1	21798944
AT3G53260.1	Os12t0520200-01	AT3G10340.1	21798944
AT3G53260.1	Os02t0626100-01	AT3G53260.1	21798944
AT3G53260.1	Os02t0626400-01	AT3G53260.1	21798944
AT3G53260.1	Os02t0626600-00	AT3G53260.1	21798944
AT3G53260.1	Os02t0627100-01	AT3G53260.1	21798944
AT3G53260.1	Os04t0518100-01	AT3G53260.1	21798944
AT3G53260.1	Os04t0518400-01	AT3G53260.1	21798944
AT3G53260.1	Os05t0427400-00	AT3G53260.1	21798944
AT3G53260.1	Os08t0308300-00	AT3G53260.1	21798944
AT3G53260.1	Os12t0461300-00	AT3G53260.1	21798944
AT3G53260.1	Os12t0520200-01	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0427400-00	Rice	cytosol, peroxisome, plastid	93.13	92.74
Os04t0518400-01	Rice	extracellular, plasma membrane	89.76	89.64
Os02t0626400-01	Rice	mitochondrion, plasma membrane	89.48	88.86
Os02t0626600-00	Rice	plasma membrane	88.5	88.25
Solyc03g036480.1.1	Tomato	peroxisome	11.78	82.35
Solyc03g036470.1.1	Tomato	mitochondrion	25.39	79.04
CDY18464	Canola	peroxisome	46.7	78.72
PGSC0003DMT400080765	Potato	peroxisome	47.12	77.24
Os02t0626100-01	Rice	extracellular, plasma membrane	75.88	77.18
Os04t0518100-01	Rice	plasma membrane	76.3	76.94
Solyc03g042560.1.1	Tomato	peroxisome	49.93	76.39
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	73.21	75.98
CDX67566	Canola	cytosol	52.17	75.76
Os12t0520200-01	Rice	plasma membrane	72.09	75.59
CDX73567	Canola	cytosol	52.45	75.4
CDX78161	Canola	cytosol	52.45	75.4
PGSC0003DMT400055489	Potato	mitochondrion	41.23	75.19
KRG91925	Soybean	cytosol, peroxisome, plastid	75.46	75.03
Solyc10g086180.1.1	Tomato	extracellular	74.75	74.96
AT3G10340.1	Thale cress	peroxisome	74.33	74.96
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	74.33	74.54
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	75.46	74.52
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	75.32	74.48
Solyc09g007920.2.1	Tomato	extracellular, nucleus	75.32	74.48
CDY66761	Canola	cytosol, peroxisome, plastid	54.14	74.37
Bra003126.1-P	Field mustard	cytosol	73.63	74.26
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	75.18	74.24
Solyc09g007910.2.1	Tomato	extracellular, nucleus	75.04	74.2
Bra029831.1-P	Field mustard	cytosol	73.35	74.08
CDY08611	Canola	cytosol	73.21	73.94
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	74.47	73.85
CDY00922	Canola	cytosol	73.07	73.8
AT3G53260.1	Thale cress	cytosol	74.19	73.78
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	74.89	73.66
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	71.11	73.58
CDX76219	Canola	cytosol	53.86	73.56
Bra006985.1-P	Field mustard	cytosol	72.51	73.23
Solyc09g007890.1.1	Tomato	plastid	73.49	72.88
Bra039777.1-P	Field mustard	peroxisome	50.91	71.18
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	36.33	70.96
Solyc03g078280.1.1	Tomato	peroxisome	25.39	70.16
CDX99621	Canola	mitochondrion	53.16	69.29
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	13.88	68.28
AT5G04230.2	Thale cress	peroxisome	66.62	68.05
Bra005221.1-P	Field mustard	peroxisome	34.92	67.12
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	64.66	66.05
CDY15917	Canola	cytosol, peroxisome, plastid	64.38	65.76
CDY13306	Canola	peroxisome	19.35	65.71
CDX74991	Canola	peroxisome	34.64	65.0
CDX91331	Canola	peroxisome	34.64	65.0
CDY18463	Canola	peroxisome	23.7	64.26
PGSC0003DMT400055529	Potato	cytosol	14.59	62.28
VIT_11s0016g01640.t01	Wine grape	peroxisome	54.56	58.5
Solyc03g071870.1.1	Tomato	peroxisome	13.74	56.98
GSMUA_Achr9P15990_001	Banana	peroxisome	55.54	56.33
Solyc10g011930.1.1	Tomato	cytosol	9.68	54.33
Solyc10g011920.1.1	Tomato	cytosol	9.54	53.54
CDY61769	Canola	peroxisome	18.93	53.36
Os12t0461300-00	Rice	plastid	18.79	52.96
Bra028793.1-P	Field mustard	peroxisome	21.74	52.72
VIT_11s0016g01520.t01	Wine grape	peroxisome	62.55	49.83
VIT_11s0016g01660.t01	Wine grape	peroxisome	12.06	49.43
Os08t0308300-00	Rice	plastid	11.5	43.62
VIT_11s0016g01510.t01	Wine grape	peroxisome	14.45	29.01

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:4330040
MapMan:9.2.1.1.1	ProteinID:AHZ41276.1	EMBL:AK068993	InterPro:Aromatic_Lyase	UniProt:B7EFQ4	ProteinID:BAD23155.1
ProteinID:BAF09398.1	ProteinID:BAS79869.1	ProteinID:EAZ23876.1	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987
GO:GO:0016829	GO:GO:0016841	GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083
InterPro:L-Aspartase-like	EnsemblPlantsGene:Os02g0627100	EnsemblPlants:Os02t0627100-01	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362
PANTHER:PTHR10362:SF31	InterPro:Phe/His_NH3-lyase_AS	InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	UniProt:Q0DZE0	SUPFAM:SSF48557
TIGRFAMs:TIGR01226	UniParc:UPI00001A53ED	RefSeq:XP_015626729.1	SEG:seg	:	:

Description

PHENYLALANINE AMMONIA-LYASE 1Similar to Phenylalanine ammonia-lyase (EC 4.3.1.5). (Os02t0627100-01)

Coordinates

chr2:-:25006495..25009018

Molecular Weight (calculated)

76985.3 Da

IEP (calculated)

6.219

GRAVY (calculated)

-0.126

Length

713 amino acids

Sequence
(BLAST)

001: MECENGRVSA NGMSGLCVAA PRADPLNWGK ATEEMTGSHL DEVKRMVAEY RQPLVKIEGA SLRIAQVAAV AAAGEARVEL DESARERVKA SSDWVMNSMM
101: NGTDSYGVTT GFGATSHRRT KEGGALQREL IRFLNAGAFG TGTDGHVLPA EATRAAMLVR INTLLQGYSG IRFEILEAIA KLLNANVTPC LPLRGTITAS
201: GDLVPLSYIA GLVTGRENAV AVAPDGSKVN AAEAFKIAGI QGGFFELQPK EGLAMVNGTA VGSGLASTVL FEANILAILA EVLSAVFCEV MNGKPEYTDH
301: LTHKLKHHPG QIEAAAIMEH ILEGSSYMKH AKKLGELDPL MKPKQDRYAL RTSPQWLGPQ IEVIRAATKS IEREINSVND NPLIDVSRGK ALHGGNFQGT
401: PIGVSMDNTR LAIAAIGKLM FAQFSELVND FYNNGLPSNL SGGRNPSLDY GFKGAEIAMA SYCSELQFLG NPVTNHVQSA EQHNQDVNSL GLISSRKTDE
501: AIDILKLMSS TFLIALCQAV DLRHIEENVK SAVKSCVMTV AKKTLSTNST GDLHVARFCE KDLLKEIDRE AVFAYADDPC SHNYPLMKKL RNVLVERALA
601: NGAAEFNADT SVFAKVAQFE EELRATLPGA IEAARAAVEN GTAAIPSRIT ECRSYPLYRF VREELGTKYL TGEKTRSPGE ELNKVLVAIN EGKHIDPLLE
701: CLKEWNGEPL PIC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.