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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • vacuole 1
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid, vacuole
BaCelLo:plastid
EpiLoc:vacuole
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:cytosol
PProwler:plastid
TargetP:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0208700-00
Os02t0626100-01
Os02t0626400-01
Os02t0626600-00
Os02t0627100-01
Os04t0518100-01
Os04t0518400-01
Os05t0427400-00
Os06t0594400-02
Os08t0308300-00
Os12t0461300-00
Os12t0520200-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37040.1 Os02t0626100-01 AT2G37040.1 21798944
AT2G37040.1 Os02t0626400-01 AT2G37040.1 21798944
AT2G37040.1 Os02t0626600-00 AT2G37040.1 21798944
AT2G37040.1 Os02t0627100-01 AT2G37040.1 21798944
AT2G37040.1 Os04t0518100-01 AT2G37040.1 21798944
AT2G37040.1 Os04t0518400-01 AT2G37040.1 21798944
AT2G37040.1 Os05t0427400-00 AT2G37040.1 21798944
AT2G37040.1 Os08t0308300-00 AT2G37040.1 21798944
AT2G37040.1 Os12t0461300-00 AT2G37040.1 21798944
AT2G37040.1 Os12t0520200-01 AT2G37040.1 21798944
AT2G37040.1 Os02t0626100-01 AT3G10340.1 21798944
AT2G37040.1 Os02t0626400-01 AT3G10340.1 21798944
AT2G37040.1 Os02t0626600-00 AT3G10340.1 21798944
AT2G37040.1 Os02t0627100-01 AT3G10340.1 21798944
AT2G37040.1 Os04t0518100-01 AT3G10340.1 21798944
AT2G37040.1 Os04t0518400-01 AT3G10340.1 21798944
AT2G37040.1 Os05t0427400-00 AT3G10340.1 21798944
AT2G37040.1 Os08t0308300-00 AT3G10340.1 21798944
AT2G37040.1 Os12t0461300-00 AT3G10340.1 21798944
AT2G37040.1 Os12t0520200-01 AT3G10340.1 21798944
AT3G10340.1 Os02t0208700-00 AT1G15670.1 21798944
AT3G10340.1 Os06t0594400-02 AT1G15670.1 21798944
AT3G53260.1 Os02t0626100-01 AT3G10340.1 21798944
AT3G53260.1 Os02t0626400-01 AT3G10340.1 21798944
AT3G53260.1 Os02t0626600-00 AT3G10340.1 21798944
AT3G53260.1 Os02t0627100-01 AT3G10340.1 21798944
AT3G53260.1 Os04t0518100-01 AT3G10340.1 21798944
AT3G53260.1 Os04t0518400-01 AT3G10340.1 21798944
AT3G53260.1 Os05t0427400-00 AT3G10340.1 21798944
AT3G53260.1 Os08t0308300-00 AT3G10340.1 21798944
AT3G53260.1 Os12t0461300-00 AT3G10340.1 21798944
AT3G53260.1 Os12t0520200-01 AT3G10340.1 21798944
AT3G53260.1 Os02t0626100-01 AT3G53260.1 21798944
AT3G53260.1 Os02t0626400-01 AT3G53260.1 21798944
AT3G53260.1 Os02t0626600-00 AT3G53260.1 21798944
AT3G53260.1 Os02t0627100-01 AT3G53260.1 21798944
AT3G53260.1 Os04t0518100-01 AT3G53260.1 21798944
AT3G53260.1 Os04t0518400-01 AT3G53260.1 21798944
AT3G53260.1 Os05t0427400-00 AT3G53260.1 21798944
AT3G53260.1 Os08t0308300-00 AT3G53260.1 21798944
AT3G53260.1 Os12t0461300-00 AT3G53260.1 21798944
AT3G53260.1 Os12t0520200-01 AT3G53260.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400055529 Potato cytosol 34.39 52.1
Os08t0308300-00 Rice plastid 32.81 44.15
Bra028793.1-P Field mustard peroxisome 32.02 27.55
Bra005221.1-P Field mustard peroxisome 40.32 27.49
CDX91331 Canola peroxisome 39.92 26.58
CDX74991 Canola peroxisome 39.92 26.58
PGSC0003DMT400055489 Potato mitochondrion 37.15 24.04
Solyc03g078280.1.1 Tomato peroxisome 24.11 23.64
CDY61769 Canola peroxisome 22.92 22.92
CDY18464 Canola peroxisome 37.15 22.22
Os04t0518400-01 Rice extracellular, plasma membrane 61.66 21.85
PGSC0003DMT400080765 Potato peroxisome 37.55 21.84
Solyc03g042560.1.1 Tomato peroxisome 39.53 21.46
Os02t0627100-01 Rice plasma membrane 52.96 18.79
Os05t0427400-00 Rice cytosol, peroxisome, plastid 52.96 18.72
Os02t0626600-00 Rice plasma membrane 52.57 18.6
Os02t0626400-01 Rice mitochondrion, plasma membrane 51.78 18.25
Solyc10g086180.1.1 Tomato extracellular 49.41 17.58
PGSC0003DMT400080548 Potato cytosol, peroxisome, plastid 49.01 17.44
Solyc09g007900.2.1 Tomato cytosol, endoplasmic reticulum, peroxisome 48.62 17.06
Solyc03g071860.2.1 Tomato endoplasmic reticulum 24.51 16.99
AT3G10340.1 Thale cress peroxisome 47.43 16.97
Bra003126.1-P Field mustard cytosol 47.43 16.97
Solyc09g007920.2.1 Tomato extracellular, nucleus 48.22 16.92
Bra017210.1-P Field mustard cytosol, peroxisome, plastid 48.22 16.9
KRH34854 Soybean cytosol, endoplasmic reticulum, peroxisome 45.85 16.89
Os02t0626100-01 Rice extracellular, plasma membrane 46.64 16.83
Os04t0518100-01 Rice plasma membrane 47.04 16.83
PGSC0003DMT400055531 Potato cytosol, peroxisome, plastid 47.83 16.83
Solyc09g007910.2.1 Tomato extracellular, nucleus 47.83 16.78
PGSC0003DMT400055488 Potato cytosol, peroxisome, plastid 47.83 16.76
AT3G53260.1 Thale cress cytosol 47.43 16.74
CDY08611 Canola cytosol 46.64 16.71
Bra006985.1-P Field mustard cytosol 46.25 16.57
AT2G37040.1 Thale cress cytosol, peroxisome, plastid 47.43 16.55
PGSC0003DMT400049886 Potato nucleus, peroxisome, plastid 45.06 16.55
KRG91925 Soybean cytosol, peroxisome, plastid 46.64 16.46
CDX99621 Canola mitochondrion 35.57 16.45
Bra029831.1-P Field mustard cytosol 45.85 16.43
CDY00922 Canola cytosol 44.27 15.86
Solyc09g007890.1.1 Tomato plastid 45.06 15.86
AT5G04230.2 Thale cress peroxisome 43.08 15.62
Os12t0520200-01 Rice plasma membrane 41.9 15.59
Bra030322.1-P Field mustard cytosol, peroxisome, plastid 41.5 15.04
CDY15917 Canola cytosol, peroxisome, plastid 41.5 15.04
VIT_11s0016g01660.t01 Wine grape peroxisome 10.28 14.94
CDY13306 Canola peroxisome 11.86 14.29
VIT_11s0016g01640.t01 Wine grape peroxisome 28.46 10.83
CDY18463 Canola peroxisome 11.07 10.65
GSMUA_Achr9P15990_001 Banana peroxisome 27.67 9.96
CDY66761 Canola cytosol, peroxisome, plastid 20.16 9.83
CDX76219 Canola cytosol 20.16 9.77
CDX73567 Canola cytosol 18.58 9.48
CDX78161 Canola cytosol 18.58 9.48
VIT_11s0016g01520.t01 Wine grape peroxisome 32.81 9.27
CDX67566 Canola cytosol 17.79 9.16
Bra039777.1-P Field mustard peroxisome 18.18 9.02
Solyc03g036470.1.1 Tomato mitochondrion 7.91 8.73
Solyc03g071870.1.1 Tomato peroxisome 5.14 7.56
Solyc03g078270.1.1 Tomato endoplasmic reticulum 3.95 6.9
Solyc10g011920.1.1 Tomato cytosol 3.16 6.3
Solyc10g011930.1.1 Tomato cytosol 3.16 6.3
VIT_11s0016g01510.t01 Wine grape peroxisome 8.3 5.92
Solyc03g036480.1.1 Tomato peroxisome 1.98 4.9
Protein Annotations
EnsemblPlants:Os12t0461300-00EnsemblPlantsGene:Os12g0461300Gene3D:1.10.274.20Gene3D:1.20.200.10GO:GO:0003674GO:GO:0003824
InterPro:Aromatic_LyaseInterPro:IPR023144InterPro:L-Aspartase-likeInterPro:Phe_NH3-lyase_shielding_dom_sfKEGG:00360+4.3.1.24KEGG:00940+4.3.1.24
PANTHER:PTHR10362PANTHER:PTHR10362:SF9ProteinID:BAT17056.1SEG:segSUPFAM:SSF48557UniParc:UPI0003939EEB
UniProt:A0A0P0Y9W1MapMan:35.1::::
Description
Similar to Phenylalanine ammonia-lyase. (Os12t0461300-00)
Coordinates
chr12:-:16274616..16275535
Molecular Weight (calculated)
27711.7 Da
IEP (calculated)
9.860
GRAVY (calculated)
-0.643
Length
253 amino acids
Sequence
(BLAST)
001: SRFCPTWVLS QRGTHVGPTC QPPLSFPSSL SHSPSSSCSA PTAAAPATRR SASSFGRPPR SSSRSSPTPS TSLPSGTPRA ERHRTASTSV PLLLAEEAVE
101: HERHRTARAR SRTRPDNPCS ANYPLMQKMR SILIEHGLAN GEAERNVDTS VFAKVATFEE ELRVALPREE RRLPRAAVEN GTAAKANRIT ECRSYPLYRS
201: VRKELGTEYL TGEKTRSPGE EVNKVSVAMN LGKHIDALLE CLKEWNGEPL PIC
Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)
001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
Arabidopsis Description
PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.