Factsheet for Os02t0626400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 15069638
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0208700-00
Os02t0626100-01
Os02t0626400-01
Os02t0626600-00
Os02t0627100-01
Os04t0518100-01
Os04t0518400-01
Os05t0427400-00
Os06t0594400-02
Os08t0308300-00
Os12t0461300-00
Os12t0520200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37040.1	Os02t0626100-01	AT2G37040.1	21798944
AT2G37040.1	Os02t0626400-01	AT2G37040.1	21798944
AT2G37040.1	Os02t0626600-00	AT2G37040.1	21798944
AT2G37040.1	Os02t0627100-01	AT2G37040.1	21798944
AT2G37040.1	Os04t0518100-01	AT2G37040.1	21798944
AT2G37040.1	Os04t0518400-01	AT2G37040.1	21798944
AT2G37040.1	Os05t0427400-00	AT2G37040.1	21798944
AT2G37040.1	Os08t0308300-00	AT2G37040.1	21798944
AT2G37040.1	Os12t0461300-00	AT2G37040.1	21798944
AT2G37040.1	Os12t0520200-01	AT2G37040.1	21798944
AT2G37040.1	Os02t0626100-01	AT3G10340.1	21798944
AT2G37040.1	Os02t0626400-01	AT3G10340.1	21798944
AT2G37040.1	Os02t0626600-00	AT3G10340.1	21798944
AT2G37040.1	Os02t0627100-01	AT3G10340.1	21798944
AT2G37040.1	Os04t0518100-01	AT3G10340.1	21798944
AT2G37040.1	Os04t0518400-01	AT3G10340.1	21798944
AT2G37040.1	Os05t0427400-00	AT3G10340.1	21798944
AT2G37040.1	Os08t0308300-00	AT3G10340.1	21798944
AT2G37040.1	Os12t0461300-00	AT3G10340.1	21798944
AT2G37040.1	Os12t0520200-01	AT3G10340.1	21798944
AT3G10340.1	Os02t0208700-00	AT1G15670.1	21798944
AT3G10340.1	Os06t0594400-02	AT1G15670.1	21798944
AT3G53260.1	Os02t0626100-01	AT3G10340.1	21798944
AT3G53260.1	Os02t0626400-01	AT3G10340.1	21798944
AT3G53260.1	Os02t0626600-00	AT3G10340.1	21798944
AT3G53260.1	Os02t0627100-01	AT3G10340.1	21798944
AT3G53260.1	Os04t0518100-01	AT3G10340.1	21798944
AT3G53260.1	Os04t0518400-01	AT3G10340.1	21798944
AT3G53260.1	Os05t0427400-00	AT3G10340.1	21798944
AT3G53260.1	Os08t0308300-00	AT3G10340.1	21798944
AT3G53260.1	Os12t0461300-00	AT3G10340.1	21798944
AT3G53260.1	Os12t0520200-01	AT3G10340.1	21798944
AT3G53260.1	Os02t0626100-01	AT3G53260.1	21798944
AT3G53260.1	Os02t0626400-01	AT3G53260.1	21798944
AT3G53260.1	Os02t0626600-00	AT3G53260.1	21798944
AT3G53260.1	Os02t0627100-01	AT3G53260.1	21798944
AT3G53260.1	Os04t0518100-01	AT3G53260.1	21798944
AT3G53260.1	Os04t0518400-01	AT3G53260.1	21798944
AT3G53260.1	Os05t0427400-00	AT3G53260.1	21798944
AT3G53260.1	Os08t0308300-00	AT3G53260.1	21798944
AT3G53260.1	Os12t0461300-00	AT3G53260.1	21798944
AT3G53260.1	Os12t0520200-01	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07175	Sorghum	cytosol, peroxisome, plastid	94.01	94.01
TraesCS6B01G258500.1	Wheat	extracellular, unclear	93.45	93.98
HORVU0Hr1G016330.1	Barley	cytosol, peroxisome, plastid	93.31	93.71
TraesCS6D01G212400.1	Wheat	cytosol, peroxisome, plastid	93.04	93.56
TraesCS6A01G222800.1	Wheat	cytosol, peroxisome, plastid	92.9	93.42
Zm00001d017275_P001	Maize	extracellular	93.04	92.91
Zm00001d051163_P002	Maize	peroxisome	92.34	92.34
Os02t0627100-01	Rice	plasma membrane	88.86	89.48
Os05t0427400-00	Rice	cytosol, peroxisome, plastid	88.72	88.97
Os04t0518400-01	Rice	extracellular, plasma membrane	87.88	88.38
Os02t0626600-00	Rice	plasma membrane	83.57	83.92
Solyc03g036480.1.1	Tomato	peroxisome	11.84	83.33
CDY18464	Canola	peroxisome	46.52	78.96
Os12t0520200-01	Rice	plasma membrane	74.23	78.38
Solyc03g036470.1.1	Tomato	mitochondrion	24.93	78.17
PGSC0003DMT400080765	Potato	peroxisome	47.21	77.93
KRH34854	Soybean	cytosol, endoplasmic reticulum, peroxisome	73.96	77.29
Solyc03g042560.1.1	Tomato	peroxisome	50.0	77.04
Os02t0626100-01	Rice	extracellular, plasma membrane	74.93	76.75
PGSC0003DMT400055489	Potato	mitochondrion	41.78	76.73
CDX67566	Canola	cytosol	52.23	76.37
KRG91925	Soybean	cytosol, peroxisome, plastid	75.77	75.87
Os04t0518100-01	Rice	plasma membrane	74.65	75.81
Solyc10g086180.1.1	Tomato	extracellular	75.07	75.81
CDX78161	Canola	cytosol	52.37	75.81
CDX73567	Canola	cytosol	52.37	75.81
PGSC0003DMT400080548	Potato	cytosol, peroxisome, plastid	74.93	75.67
CDY66761	Canola	cytosol, peroxisome, plastid	54.46	75.34
Solyc09g007910.2.1	Tomato	extracellular, nucleus	75.63	75.31
Solyc09g007900.2.1	Tomato	cytosol, endoplasmic reticulum, peroxisome	75.63	75.31
PGSC0003DMT400055488	Potato	cytosol, peroxisome, plastid	75.63	75.21
Solyc09g007920.2.1	Tomato	extracellular, nucleus	75.49	75.17
AT3G10340.1	Thale cress	peroxisome	73.82	74.96
Bra003126.1-P	Field mustard	cytosol	73.82	74.96
Bra017210.1-P	Field mustard	cytosol, peroxisome, plastid	75.35	74.93
PGSC0003DMT400055531	Potato	cytosol, peroxisome, plastid	74.93	74.83
CDY00922	Canola	cytosol	73.54	74.79
Bra029831.1-P	Field mustard	cytosol	73.4	74.65
CDX76219	Canola	cytosol	54.18	74.52
CDY08611	Canola	cytosol	73.26	74.5
AT3G53260.1	Thale cress	cytosol	74.09	74.2
AT2G37040.1	Thale cress	cytosol, peroxisome, plastid	74.79	74.07
PGSC0003DMT400049886	Potato	nucleus, peroxisome, plastid	70.89	73.88
Solyc09g007890.1.1	Tomato	plastid	73.68	73.57
Bra006985.1-P	Field mustard	cytosol	72.01	73.23
Solyc03g078280.1.1	Tomato	peroxisome	26.18	72.87
Bra039777.1-P	Field mustard	peroxisome	51.25	72.16
Solyc03g071860.2.1	Tomato	endoplasmic reticulum	36.35	71.51
CDX99621	Canola	mitochondrion	53.76	70.57
AT5G04230.2	Thale cress	peroxisome	67.41	69.34
Solyc03g078270.1.1	Tomato	endoplasmic reticulum	13.65	67.59
Bra030322.1-P	Field mustard	cytosol, peroxisome, plastid	65.6	67.48
CDY15917	Canola	cytosol, peroxisome, plastid	65.46	67.34
Bra005221.1-P	Field mustard	peroxisome	34.54	66.85
CDY18463	Canola	peroxisome	23.82	65.02
CDY13306	Canola	peroxisome	18.94	64.76
CDX91331	Canola	peroxisome	34.26	64.74
CDX74991	Canola	peroxisome	34.26	64.74
PGSC0003DMT400055529	Potato	cytosol	14.62	62.87
VIT_11s0016g01640.t01	Wine grape	peroxisome	54.46	58.8
Solyc03g071870.1.1	Tomato	peroxisome	14.07	58.72
GSMUA_Achr9P15990_001	Banana	peroxisome	56.41	57.61
Solyc10g011920.1.1	Tomato	cytosol	10.03	56.69
Solyc10g011930.1.1	Tomato	cytosol	9.89	55.91
Bra028793.1-P	Field mustard	peroxisome	21.59	52.72
CDY61769	Canola	peroxisome	18.38	52.17
Os12t0461300-00	Rice	plastid	18.25	51.78
VIT_11s0016g01520.t01	Wine grape	peroxisome	62.26	49.94
VIT_11s0016g01660.t01	Wine grape	peroxisome	11.56	47.7
Os08t0308300-00	Rice	plastid	11.7	44.68
VIT_11s0016g01510.t01	Wine grape	peroxisome	14.76	29.86

Protein Annotations

KEGG:00360+4.3.1.24	KEGG:00940+4.3.1.24	Gene3D:1.10.274.20	Gene3D:1.10.275.10	Gene3D:1.20.200.10	EntrezGene:4330036
MapMan:9.2.1.1.1	EMBL:AK120127	InterPro:Aromatic_Lyase	ProteinID:BAD23151.1	ProteinID:BAF09396.1	ProteinID:BAS79864.1
ProteinID:EAZ23874.1	InterPro:Fumarase/histidase_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006559	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009698	GO:GO:0009800	GO:GO:0009987	GO:GO:0016829	GO:GO:0016841
GO:GO:0019748	GO:GO:0045548	InterPro:IPR023144	InterPro:IPR024083	InterPro:L-Aspartase-like	EnsemblPlantsGene:Os02g0626400
EnsemblPlants:Os02t0626400-01	PFAM:PF00221	ScanProsite:PS00488	PANTHER:PTHR10362	PANTHER:PTHR10362:SF22	InterPro:Phe/His_NH3-lyase_AS
InterPro:Phe_NH3-lyase	InterPro:Phe_NH3-lyase_shielding_dom_sf	UniProt:Q6K6Q1	SUPFAM:SSF48557	TIGRFAMs:TIGR01226	UniParc:UPI00003B0556
RefSeq:XP_015625125.1	SEG:seg	:	:	:	:

Description

PHENYLALANINE AMMONIA-LYASEPhenylalanine ammonia-lyase (EC 4.3.1.5). (Os02t0626400-01);Similar to Phenylalanine ammonia-lyase. (Os02t0626400-02);Similar to Phenylalanine ammonia-lyase. (Os02t0626400-03)

Coordinates

chr2:-:24985294..24989388

Molecular Weight (calculated)

77762.7 Da

IEP (calculated)

6.426

GRAVY (calculated)

-0.093

Length

718 amino acids

Sequence
(BLAST)

001: MECETGLVRS LNGDGLCMSS VSAPPRADPL NWGKAADELA GSHLDEVKRM VEDFRQPLVK IEGASLTIAQ VAAVAAGAGD ARVELDESAR GRVKASSDWV
101: MNSMMNGTDS YGVTTGFGAT SHRRTKEGGA LQRELIRFLN AGAFGTGTDG HVLPAEATRA AMLVRINTLL QGYSGIRFEI LEAITKLLNA NVTPCLPLRG
201: TITASGDLVP LSYIAGLITG RQNSVAVAPD GRKVTAAEAF KIAGIEHGFF ELQPKEGLAM VNGTAVGSGL ASTVLFEANV LAILAEVLSA VFCEVMTGKP
301: EYTDHLTHKL KHHPGQIEAA AIMEHILEGS SYMKLAKKLG ELDPLMKPKQ DRYALRTSPQ WLGPQIEVIR FATKSIEREI NSVNDNPLID VSRGKALHGG
401: NFQGTPIGVS MDNTRLALAA IGKLMFAQFS ELVNDFYNNG LPSNLSGGRN PSLDYGFKGA EIAMASYCSE LQFLGNPVTN HVQSAEQHNQ DVNSLGLISS
501: RKTAEAIDIL KLMSSTFLIA LCQAIDLRHL EENMKTAVKN CVMQVAKKSL SMNHMGGLHI ARFCEKDLLT AIDREAVFAY ADDPCSANYP LMQKLRAVLI
601: EHALANGDAE RVLETSIFAK VAEFEQHVRA ALPKEVEAAR AAVENGTPLV PNRIKECRSY PLYRFVREEV GTEYLTGEKT RSPGEELNKV LVAINERKHI
701: DPLLECLKEW NGAPLPLC

Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)

001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC

Arabidopsis Description

PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.