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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 2
  • peroxisome 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, peroxisome, plastid
iPSORT:plastid
MultiLoc:peroxisome
TargetP:plastid
YLoc:cytosol
 plasma membrane: 29385242
msms PMID: 29385242 doi
K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G016330.1
HORVU1Hr1G022060.1
HORVU2Hr1G038120.1
HORVU2Hr1G038140.1
HORVU2Hr1G062750.1
HORVU2Hr1G089440.9
HORVU2Hr1G089540.1
HORVU3Hr1G005330.2
HORVU6Hr1G058820.2
HORVU6Hr1G058840.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G37040.1 HORVU0Hr1G016330.1 AT2G37040.1 21798944
AT2G37040.1 HORVU1Hr1G022060.1 AT2G37040.1 21798944
AT2G37040.1 HORVU2Hr1G038120.1 AT2G37040.1 21798944
AT2G37040.1 HORVU2Hr1G038140.1 AT2G37040.1 21798944
AT2G37040.1 HORVU2Hr1G062750.1 AT2G37040.1 21798944
AT2G37040.1 HORVU2Hr1G089440.9 AT2G37040.1 21798944
AT2G37040.1 HORVU2Hr1G089540.1 AT2G37040.1 21798944
AT2G37040.1 HORVU3Hr1G005330.2 AT2G37040.1 21798944
AT2G37040.1 HORVU6Hr1G058820.2 AT2G37040.1 21798944
AT2G37040.1 HORVU6Hr1G058840.1 AT2G37040.1 21798944
AT2G37040.1 HORVU0Hr1G016330.1 AT3G10340.1 21798944
AT2G37040.1 HORVU1Hr1G022060.1 AT3G10340.1 21798944
AT2G37040.1 HORVU2Hr1G038120.1 AT3G10340.1 21798944
AT2G37040.1 HORVU2Hr1G038140.1 AT3G10340.1 21798944
AT2G37040.1 HORVU2Hr1G062750.1 AT3G10340.1 21798944
AT2G37040.1 HORVU2Hr1G089440.9 AT3G10340.1 21798944
AT2G37040.1 HORVU2Hr1G089540.1 AT3G10340.1 21798944
AT2G37040.1 HORVU3Hr1G005330.2 AT3G10340.1 21798944
AT2G37040.1 HORVU6Hr1G058820.2 AT3G10340.1 21798944
AT2G37040.1 HORVU6Hr1G058840.1 AT3G10340.1 21798944
AT3G53260.1 HORVU0Hr1G016330.1 AT3G10340.1 21798944
AT3G53260.1 HORVU1Hr1G022060.1 AT3G10340.1 21798944
AT3G53260.1 HORVU2Hr1G038120.1 AT3G10340.1 21798944
AT3G53260.1 HORVU2Hr1G038140.1 AT3G10340.1 21798944
AT3G53260.1 HORVU2Hr1G062750.1 AT3G10340.1 21798944
AT3G53260.1 HORVU2Hr1G089440.9 AT3G10340.1 21798944
AT3G53260.1 HORVU2Hr1G089540.1 AT3G10340.1 21798944
AT3G53260.1 HORVU3Hr1G005330.2 AT3G10340.1 21798944
AT3G53260.1 HORVU6Hr1G058820.2 AT3G10340.1 21798944
AT3G53260.1 HORVU6Hr1G058840.1 AT3G10340.1 21798944
AT3G53260.1 HORVU0Hr1G016330.1 AT3G53260.1 21798944
AT3G53260.1 HORVU1Hr1G022060.1 AT3G53260.1 21798944
AT3G53260.1 HORVU2Hr1G038120.1 AT3G53260.1 21798944
AT3G53260.1 HORVU2Hr1G038140.1 AT3G53260.1 21798944
AT3G53260.1 HORVU2Hr1G062750.1 AT3G53260.1 21798944
AT3G53260.1 HORVU2Hr1G089440.9 AT3G53260.1 21798944
AT3G53260.1 HORVU2Hr1G089540.1 AT3G53260.1 21798944
AT3G53260.1 HORVU3Hr1G005330.2 AT3G53260.1 21798944
AT3G53260.1 HORVU6Hr1G058820.2 AT3G53260.1 21798944
AT3G53260.1 HORVU6Hr1G058840.1 AT3G53260.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2A01G381000.1 Wheat plastid 91.53 98.46
TraesCS2A01G381100.1 Wheat plastid 91.39 98.32
TraesCS2D01G377400.1 Wheat cytosol, peroxisome, plastid 91.26 98.18
TraesCS2B01G398400.1 Wheat cytosol, peroxisome, plastid 91.13 98.04
TraesCS2A01G380900.1 Wheat cytosol, peroxisome, plastid 91.13 98.04
TraesCS2D01G377200.1 Wheat cytosol, peroxisome, plastid 91.0 97.9
TraesCS2B01G398200.1 Wheat cytosol, peroxisome, plastid 91.0 97.9
TraesCS2B01G398000.2 Wheat plastid 90.87 97.76
TraesCS2A01G380800.1 Wheat cytosol, peroxisome, plastid 90.87 97.76
TraesCS2D01G377600.1 Wheat plastid 90.35 97.74
TraesCS2D01G377500.1 Wheat cytosol, peroxisome, plastid 90.74 97.62
TraesCS2B01G398300.2 Wheat peroxisome 46.41 96.74
HORVU2Hr1G089540.1 Barley peroxisome 58.93 96.38
HORVU1Hr1G022060.1 Barley cytosol, peroxisome, plastid 86.05 93.35
HORVU2Hr1G038120.1 Barley cytosol, peroxisome, plastid 86.05 93.35
Os04t0518400-01 Rice extracellular, plasma membrane 86.05 92.44
TraesCS2B01G020100.1 Wheat peroxisome 80.96 91.19
OQU81984 Sorghum peroxisome 83.83 90.06
Zm00001d003015_P001 Maize peroxisome 82.53 88.53
HORVU6Hr1G058840.1 Barley cytosol, peroxisome, plasma membrane 82.01 88.34
HORVU2Hr1G038140.1 Barley mitochondrion, plastid 81.75 86.72
HORVU0Hr1G016330.1 Barley cytosol, peroxisome, plastid 80.57 86.43
Solyc03g036480.1.1 Tomato peroxisome 10.82 81.37
CDY18464 Canola peroxisome 43.94 79.67
PGSC0003DMT400080765 Potato peroxisome 44.72 78.85
PGSC0003DMT400055489 Potato mitochondrion 39.77 78.01
Solyc03g042560.1.1 Tomato peroxisome 47.07 77.47
CDX67566 Canola cytosol 49.41 77.19
CDX73567 Canola cytosol 49.8 77.02
CDX78161 Canola cytosol 49.8 77.02
Solyc03g036470.1.1 Tomato mitochondrion 22.82 76.42
KRH34854 Soybean cytosol, endoplasmic reticulum, peroxisome 68.32 76.27
CDY66761 Canola cytosol, peroxisome, plastid 51.37 75.92
Bra003126.1-P Field mustard cytosol 69.88 75.81
Solyc10g086180.1.1 Tomato extracellular 70.14 75.67
PGSC0003DMT400080548 Potato cytosol, peroxisome, plastid 70.01 75.53
AT3G10340.1 Thale cress peroxisome 69.49 75.39
Bra017210.1-P Field mustard cytosol, peroxisome, plastid 70.8 75.21
CDX76219 Canola cytosol 51.11 75.1
KRG91925 Soybean cytosol, peroxisome, plastid 70.14 75.03
Solyc09g007920.2.1 Tomato extracellular, nucleus 70.4 74.9
PGSC0003DMT400055488 Potato cytosol, peroxisome, plastid 70.4 74.79
Bra029831.1-P Field mustard cytosol 68.84 74.79
Solyc09g007900.2.1 Tomato cytosol, endoplasmic reticulum, peroxisome 70.27 74.76
Solyc09g007910.2.1 Tomato extracellular, nucleus 70.27 74.76
CDY08611 Canola cytosol 68.71 74.65
AT3G53260.1 Thale cress cytosol 69.75 74.62
CDY00922 Canola cytosol 68.58 74.5
Bra006985.1-P Field mustard cytosol 68.45 74.36
AT2G37040.1 Thale cress cytosol, peroxisome, plastid 70.14 74.21
PGSC0003DMT400049886 Potato nucleus, peroxisome, plastid 66.62 74.17
Solyc03g078280.1.1 Tomato peroxisome 24.9 74.03
PGSC0003DMT400055531 Potato cytosol, peroxisome, plastid 69.23 73.85
Solyc09g007890.1.1 Tomato plastid 68.58 73.16
Bra039777.1-P Field mustard peroxisome 48.24 72.55
Solyc03g071860.2.1 Tomato endoplasmic reticulum 34.16 71.78
CDX99621 Canola mitochondrion 50.46 70.75
AT5G04230.2 Thale cress peroxisome 63.23 69.48
HORVU3Hr1G005330.2 Barley cytosol, peroxisome, plasma membrane 62.45 69.42
HORVU2Hr1G062750.1 Barley mitochondrion 16.3 67.93
Solyc03g078270.1.1 Tomato endoplasmic reticulum 12.78 67.59
CDY15917 Canola cytosol, peroxisome, plastid 61.41 67.48
Bra030322.1-P Field mustard cytosol, peroxisome, plastid 61.28 67.34
HORVU6Hr1G058820.2 Barley mitochondrion 62.06 67.14
Bra005221.1-P Field mustard peroxisome 32.46 67.12
PGSC0003DMT400055529 Potato cytosol 14.6 67.07
CDY13306 Canola peroxisome 17.99 65.71
CDX91331 Canola peroxisome 32.2 65.0
CDX74991 Canola peroxisome 32.2 65.0
CDY18463 Canola peroxisome 21.9 63.88
VIT_11s0016g01640.t01 Wine grape peroxisome 50.2 57.89
Solyc03g071870.1.1 Tomato peroxisome 12.65 56.4
GSMUA_Achr9P15990_001 Banana peroxisome 50.98 55.62
Solyc10g011930.1.1 Tomato cytosol 9.0 54.33
Solyc10g011920.1.1 Tomato cytosol 8.87 53.54
CDY61769 Canola peroxisome 17.6 53.36
Bra028793.1-P Field mustard peroxisome 20.34 53.06
VIT_11s0016g01520.t01 Wine grape peroxisome 57.63 49.39
VIT_11s0016g01660.t01 Wine grape peroxisome 11.08 48.85
VIT_11s0016g01510.t01 Wine grape peroxisome 13.43 29.01
Protein Annotations
KEGG:00360+4.3.1.24KEGG:00940+4.3.1.24Gene3D:1.10.274.20Gene3D:1.10.275.10Gene3D:1.20.200.10MapMan:9.2.1.1.1
UniProt:A0A287IVF5InterPro:Aromatic_LyaseInterPro:Fumarase/histidase_NGO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006559GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009058GO:GO:0009698GO:GO:0009800GO:GO:0009987GO:GO:0016829
GO:GO:0016841GO:GO:0019748GO:GO:0045548EnsemblPlantsGene:HORVU2Hr1G089440EnsemblPlants:HORVU2Hr1G089440.9InterPro:IPR023144
InterPro:IPR024083InterPro:L-Aspartase-likePFAM:PF00221ScanProsite:PS00488PANTHER:PTHR10362PANTHER:PTHR10362:SF9
InterPro:Phe/His_NH3-lyase_ASInterPro:Phe_NH3-lyaseInterPro:Phe_NH3-lyase_shielding_dom_sfSUPFAM:SSF48557TIGRFAMs:TIGR01226UniParc:UPI000B465DAF
SEG:seg:::::
Description
Phenylalanine ammonia-lyase [Source:UniProtKB/TrEMBL;Acc:A0A287IVF5]
Coordinates
chrchr2H:+:639060958..639063743
Molecular Weight (calculated)
83450.8 Da
IEP (calculated)
6.405
GRAVY (calculated)
-0.147
Length
767 amino acids
Sequence
(BLAST)
001: FICSYSSSST QVFLQDTDQS RYTYTCRRLA SLLSESRHIH QLVHLFRTTS LHISMECENA HVAANGDGLC VAQPARADPL NWGKAAEELS GSHLDAVKRM
101: VEEYRKPVVT MEGASLTIAM VAAVAAGNDT RVELDESARG RVKESSDWVM NSMMNGTDSY GVTTGFGATS HRRTKEGGAL QRELIRFLNA GAFGTGTDGH
201: VLPAATTRAA MLVRVNTLLQ GYSGIRFEIL ETIATLLNAN VTPCLPLRGT ITASGDLVPL SYIAGLVTGR PNSVATAPDG TKVNAAEAFK IAGIQHGFFE
301: LQPKEGLAMV NGTAVGSGLA SMVLFEANVL SLLAEVLSAV FCEVMNGKPE YTDHLTHKLK HHPGQIEAAA IMEHILEGSS YMMLAKKLGE LDPLMKPKQD
401: RYALRTSPQW LGPQIEVIRA ATKSIEREIN SVNDNPLIDV SRGKAIHGGN FQGTPIGVSM DNTRLAIAAI GKLMFAQFSE LVNDFYNNGL PSNLSGGRNP
501: SLDYGFKGAE IAMASYCSEL QFLGNPVTNH VQSAEQHNQD VNSLGLISSR KTAEAIDILK LMSSTFLVAL CQAIDLRHLE ENVKNAVKSC VKTVARKTLS
601: TDSNGHLHNA RFCEKDLLLT IDREAVFAYA DDPCSANYPL MQKMRAVLVE HALANGEAEH DVETSVFAKL ATFEQELRAV LPKEVEAARS AVENGTAAQQ
701: NRITECRSYP LYRFVRKELG TEYLTGEKTR SPGEEVDKVF VAMNQGKHID ALLECLKEWN GEPLPIC
Best Arabidopsis Sequence Match ( AT2G37040.1 )
(BLAST)
001: MEINGAHKSN GGGVDAMLCG GDIKTKNMVI NAEDPLNWGA AAEQMKGSHL DEVKRMVAEF RKPVVNLGGE TLTIGQVAAI STIGNSVKVE LSETARAGVN
101: ASSDWVMESM NKGTDSYGVT TGFGATSHRR TKNGVALQKE LIRFLNAGIF GSTKETSHTL PHSATRAAML VRINTLLQGF SGIRFEILEA ITSFLNNNIT
201: PSLPLRGTIT ASGDLVPLSY IAGLLTGRPN SKATGPNGEA LTAEEAFKLA GISSGFFDLQ PKEGLALVNG TAVGSGMASM VLFETNVLSV LAEILSAVFA
301: EVMSGKPEFT DHLTHRLKHH PGQIEAAAIM EHILDGSSYM KLAQKLHEMD PLQKPKQDRY ALRTSPQWLG PQIEVIRYAT KSIEREINSV NDNPLIDVSR
401: NKAIHGGNFQ GTPIGVSMDN TRLAIAAIGK LMFAQFSELV NDFYNNGLPS NLTASRNPSL DYGFKGAEIA MASYCSELQY LANPVTSHVQ SAEQHNQDVN
501: SLGLISSRKT SEAVDILKLM STTFLVAICQ AVDLRHLEEN LRQTVKNTVS QVAKKVLTTG VNGELHPSRF CEKDLLKVVD REQVYTYADD PCSATYPLIQ
601: KLRQVIVDHA LINGESEKNA VTSIFHKIGA FEEELKAVLP KEVEAARAAY DNGTSAIPNR IKECRSYPLY RFVREELGTE LLTGEKVTSP GEEFDKVFTA
701: ICEGKIIDPM MECLNEWNGA PIPIC
Arabidopsis Description
PAL1Phenylalanine ammonia-lyase 1 [Source:UniProtKB/Swiss-Prot;Acc:P35510]
SUBAcon: [peroxisome,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.