Factsheet for Bra007494.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003126.1-P
Bra003735.1-P
Bra005221.1-P
Bra006985.1-P
Bra008231.1-P
Bra015801.1-P
Bra017210.1-P
Bra039777.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59940.1	Bra003735.1-P	AT1G75950.1	12795696
AT3G59940.1	Bra008231.1-P	AT1G75950.1	12795696
AT3G59940.1	Bra015801.1-P	AT1G75950.1	12795696
AT3G59940.1	Bra003735.1-P	AT1G75950.1	21798944
AT3G59940.1	Bra008231.1-P	AT1G75950.1	21798944
AT3G59940.1	Bra015801.1-P	AT1G75950.1	21798944
AT3G59940.1	Bra005221.1-P	AT2G37040.1	21798944
AT3G59940.1	Bra017210.1-P	AT2G37040.1	21798944
AT3G59940.1	Bra003126.1-P	AT3G53260.1	21798944
AT3G59940.1	Bra006985.1-P	AT3G53260.1	21798944
AT3G59940.1	Bra039777.1-P	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41196	Canola	nucleus	87.14	91.5
AT3G59940.1	Thale cress	cytosol	74.52	74.88
Bra000342.1-P	Field mustard	cytosol	53.81	56.36
Bra004807.1-P	Field mustard	cytosol	56.9	55.71
TraesCS4B01G087600.1	Wheat	cytosol	31.67	36.14
VIT_05s0094g01590.t01	Wine grape	cytosol	31.19	35.89
TraesCS4A01G228600.1	Wheat	cytosol	31.43	35.87
Zm00001d049016_P001	Maize	cytosol	31.43	35.48
TraesCS4A01G228800.1	Wheat	cytosol	30.95	35.14
HORVU4Hr1G014970.1	Barley	cytosol	30.71	34.96
TraesCS4D01G084900.1	Wheat	cytosol	30.71	34.86
TraesCS4B01G087800.1	Wheat	cytosol	30.71	34.86
Zm00001d007274_P001	Maize	cytosol	30.71	34.58
EES09544	Sorghum	cytosol	30.95	33.94
EES08254	Sorghum	cytosol	30.0	32.98
PGSC0003DMT400060940	Potato	cytosol	26.9	32.94
Os11t0246200-00	Rice	cytosol	30.0	32.9
TraesCS4D01G085000.1	Wheat	plastid	31.19	32.19
Solyc10g080610.1.1	Tomato	cytosol	25.95	31.69
Zm00001d050815_P001	Maize	nucleus	27.86	31.37
KRH58914	Soybean	extracellular, plasma membrane	28.33	30.91
OQU85159	Sorghum	cytosol	28.1	30.73
GSMUA_Achr6P06940_001	Banana	cytosol	26.67	30.27
Os02t0563000-00	Rice	cytosol	26.67	28.64
Bra026753.1-P	Field mustard	cytosol	23.33	27.37
Bra026116.1-P	Field mustard	cytosol	23.33	27.37
Bra035183.1-P	Field mustard	cytosol	22.86	26.74
GSMUA_Achr6P28790_001	Banana	cytosol	9.52	24.24

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:9.2.1.1.2	EnsemblPlantsGene:Bra007494	EnsemblPlants:Bra007494.1	EnsemblPlants:Bra007494.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0019748	GO:GO:0080037
GO:GO:2000762	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4CTF1
PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF34	SMART:SM00256	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002542F4D	SEG:seg	:	:

Description

AT3G59940 (E=1e-165) | kelch repeat-containing F-box family protein

Coordinates

chrA09:+:29491087..29492349

Molecular Weight (calculated)

46624.1 Da

IEP (calculated)

5.361

GRAVY (calculated)

-0.361

Length

420 amino acids

Sequence
(BLAST)

001: MRVSEEFNVR GDFRSRRDLI SGLPEELATE CLVRVPFEFH SSMKSVSRLW RSLVADRSFD RERRRAGKDE SLLCLVQPLT SQSSPVNSSV DGEVSEKKKE
101: EEGESHSHSQ QQLQQPRVIG TPLYGLSVYN ATLDTWHRVA IPERIPLFCE CVALQDAGKV LLIGGWDPET LQPVKDVFVL DFSAAGRRWK RGKPMSSARS
201: FFACAAVGAT KVYVAGGHDD QKNAIKSAEV YDVEKDEWLT IPPMTEGRDE CHGFSMAADL GFCVLSGYGT ETQGQFRSDA EIYDPVSNSW SVIENVWPFP
301: DLSPRGRTAA VAESAGDFRG CKLWCFVDSQ RQCQPRWEVE DDSMKWRLVM ETIRLPVTTM TSVFAGSLSG QAVAMIGGGG EESGTMMMMT KGEKNGGKWS
401: HVSTPSGFSS LPFSYSSIYV

Best Arabidopsis Sequence Match ( AT3G59940.1 )
(BLAST)

001: MGVSKKKSGE IRGDLIPGLP EELAIECLVR VPFQFHSSIK SVCRSWKCVI SSRSFIKERI GFGKAESLLC LVQPLTSPPS PAMMEGGEMS QKKKEEEEGE
101: SQMTQQLLQP RITGTPLYGL SVYNATLDTW HRVAIPERIP LFCECVAIQD AGKVLLIGGW DPETLQPVRD VFVLDFFAGE GSGRRFRRGR PMSAARSFFA
201: CASVGSTKVY VAGGHDDQKN ALRSAEVYDV EKDEWSMLPP MTEGRDECHG FSMATDPGFC VLSGYGTETQ GQFRSDGEIY DPITNSWSTI ENVWPFPDLS
301: PRGRTAAAAA EFPGDFRGCR LWCFIDSERQ SQPHWEVEDD SMKWKVIMDT IRLPVTTMTS VFAGSLSGQA VAMIGGGGEE SGTMMVKTTA EKNGGKWSHV
401: NTPSGFSSLP FSCSSIYV

Arabidopsis Description

SKIP20F-box/kelch-repeat protein SKIP20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.