Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G084900.1 | Wheat | cytosol | 98.92 | 98.92 |
| TraesCS4B01G087800.1 | Wheat | cytosol | 98.38 | 98.38 |
| HORVU4Hr1G014970.1 | Barley | cytosol | 97.57 | 97.83 |
| TraesCS4A01G228600.1 | Wheat | cytosol | 88.11 | 88.59 |
| Os11t0246200-00 | Rice | cytosol | 82.7 | 79.9 |
| Zm00001d049016_P001 | Maize | cytosol | 80.27 | 79.84 |
| EES09544 | Sorghum | cytosol | 81.35 | 78.59 |
| EES08254 | Sorghum | cytosol | 80.54 | 78.01 |
| Zm00001d007274_P001 | Maize | cytosol | 77.84 | 77.21 |
| GSMUA_Achr6P06940_001 | Banana | cytosol | 38.38 | 38.38 |
| GSMUA_Achr6P28790_001 | Banana | cytosol | 15.95 | 35.76 |
| TraesCS6A01G178900.1 | Wheat | cytosol | 33.51 | 33.33 |
| CDX83439 | Canola | cytosol | 34.05 | 32.31 |
| CDY41196 | Canola | nucleus | 34.86 | 32.25 |
| PGSC0003DMT400060940 | Potato | cytosol | 29.73 | 32.07 |
| CDX95589 | Canola | cytosol | 33.51 | 31.79 |
| CDX71859 | Canola | cytosol | 34.32 | 31.59 |
| Bra000342.1-P | Field mustard | cytosol | 34.05 | 31.42 |
| Solyc10g080610.1.1 | Tomato | cytosol | 29.19 | 31.4 |
| KRH58914 | Soybean | extracellular, plasma membrane | 32.43 | 31.17 |
| Bra007494.1-P | Field mustard | nucleus | 35.14 | 30.95 |
| AT3G59940.1 | Thale cress | cytosol | 34.59 | 30.62 |
| CDY17882 | Canola | cytosol, mitochondrion, nucleus | 31.35 | 30.29 |
| CDX79780 | Canola | cytosol | 33.78 | 29.9 |
| VIT_05s0094g01590.t01 | Wine grape | cytosol | 29.46 | 29.86 |
| Bra004807.1-P | Field mustard | cytosol | 34.32 | 29.6 |
| AT2G44130.1 | Thale cress | cytosol | 32.7 | 29.58 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G228800.1 | EnsemblPlantsGene:TraesCS4A01G228800 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF34 | PFAM:PF00646 | PFAM:PF01344 | SEG:seg | SMART:SM00612 |
| SUPFAM:SSF117281 | SUPFAM:SSF81383 | MapMan:9.2.1.1.2 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:537272548..537274101
Molecular Weight (calculated)
39648.6 Da
IEP (calculated)
6.268
GRAVY (calculated)
-0.252
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNQKSRVQE CKVEHVDLIP GMPDDVAVDC LARVPHASFR SMRGVCRGWN TAAAAPDFAL ARAEAGANED LVYLLQFGNP AAADADGAAP ENAQAYGVSV
101: YNVTTGEWRR EGAAPPVPMF AQCAAVGSRL AVLGGWDPET FEPVADVHVL DASTGVWRRG APMRSARSFF ACAEAGGKIY VAGGHDKLKN ALKTAEAYDA
201: GADAWDPLPD MSEERDECDG MATVAGDRFL AVSGYRTGRQ GGFERDAEWF DPASREWRRL ERVRAPPSAA HVVVRGRVWC IEGTAVMEYR GERRSWREVG
301: PSPPGLKAGT ARAVAVGGGE RVVVTGAIES EGGGTGHALW VFDVKSKSWT VVRPPPQFAG FVFSIGSVRV
101: YNVTTGEWRR EGAAPPVPMF AQCAAVGSRL AVLGGWDPET FEPVADVHVL DASTGVWRRG APMRSARSFF ACAEAGGKIY VAGGHDKLKN ALKTAEAYDA
201: GADAWDPLPD MSEERDECDG MATVAGDRFL AVSGYRTGRQ GGFERDAEWF DPASREWRRL ERVRAPPSAA HVVVRGRVWC IEGTAVMEYR GERRSWREVG
301: PSPPGLKAGT ARAVAVGGGE RVVVTGAIES EGGGTGHALW VFDVKSKSWT VVRPPPQFAG FVFSIGSVRV
001: MELIPNLPDD VARECLLRSS YQQFPVIASV CRAWNREVSL SQFLHQRKAS RHSQELLILS QARVDPAGSG KIIATPEYRI SVLESGSGLW TELPPIPGQT
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
101: KGLPLFCRLV SVGSDLIVLG GLDPITWQAH DSVFVFSFLT SKWRVGATMP GVRRSFFGCA SDSDRTVLVA GGHNEEKCAL TSAMVYDVSE DKWTFLPDMA
201: RERDECKAVF HAGRFHVIGG YATEEQGQFS KTAESFDVST WEWGPLTEDF LDDTGDTVSP PTCVAGGDLY ACWGGDVMMF LNDKWQKVGQ IPADVYNVTY
301: VAVRPGMLIV IGNGKALAGY GEATVGYICD LSSSRWVKLE THGGHVQAGC FLEV
Arabidopsis Description
F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.