Factsheet for PGSC0003DMT400060940

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400049886
PGSC0003DMT400055488
PGSC0003DMT400055489
PGSC0003DMT400055529
PGSC0003DMT400055531
PGSC0003DMT400080548
PGSC0003DMT400080765

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59940.1	PGSC0003DMT400049886	AT2G37040.1	21798944
AT3G59940.1	PGSC0003DMT400055488	AT2G37040.1	21798944
AT3G59940.1	PGSC0003DMT400055489	AT2G37040.1	21798944
AT3G59940.1	PGSC0003DMT400055529	AT2G37040.1	21798944
AT3G59940.1	PGSC0003DMT400055531	AT2G37040.1	21798944
AT3G59940.1	PGSC0003DMT400080548	AT2G37040.1	21798944
AT3G59940.1	PGSC0003DMT400080765	AT2G37040.1	21798944
AT3G59940.1	PGSC0003DMT400049886	AT3G53260.1	21798944
AT3G59940.1	PGSC0003DMT400055488	AT3G53260.1	21798944
AT3G59940.1	PGSC0003DMT400055489	AT3G53260.1	21798944
AT3G59940.1	PGSC0003DMT400055529	AT3G53260.1	21798944
AT3G59940.1	PGSC0003DMT400055531	AT3G53260.1	21798944
AT3G59940.1	PGSC0003DMT400080548	AT3G53260.1	21798944
AT3G59940.1	PGSC0003DMT400080765	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080610.1.1	Tomato	cytosol	94.17	93.9
VIT_08s0007g07120.t01	Wine grape	cytosol	65.01	65.01
PGSC0003DMT400006584	Potato	cytosol	35.57	34.37
PGSC0003DMT400042651	Potato	cytosol	34.11	32.32
Zm00001d007274_P001	Maize	cytosol	34.69	31.9
PGSC0003DMT400042652	Potato	cytosol	33.53	31.77
Zm00001d049016_P001	Maize	cytosol	34.4	31.72
PGSC0003DMT400006583	Potato	cytosol	32.94	31.39
PGSC0003DMT400042650	Potato	cytosol	33.82	30.69
TraesCS4B01G087600.1	Wheat	cytosol	32.65	30.43
Zm00001d050815_P001	Maize	nucleus	32.94	30.29
EES08254	Sorghum	cytosol	33.53	30.1
TraesCS4A01G228600.1	Wheat	cytosol	32.07	29.89
HORVU4Hr1G014970.1	Barley	cytosol	32.07	29.81
EES09544	Sorghum	cytosol	33.24	29.77
TraesCS4A01G228800.1	Wheat	cytosol	32.07	29.73
TraesCS4B01G087800.1	Wheat	cytosol	32.07	29.73
TraesCS4D01G084900.1	Wheat	cytosol	32.07	29.73
GSMUA_Achr6P28790_001	Banana	cytosol	14.29	29.7
Os02t0563000-00	Rice	cytosol	33.82	29.67
Os11t0246200-00	Rice	cytosol	32.94	29.5
CDX95589	Canola	cytosol	32.94	28.97
CDX71859	Canola	cytosol	33.24	28.36
OQU85159	Sorghum	cytosol	31.49	28.12
CDX83439	Canola	cytosol	31.78	27.95
CDY17882	Canola	cytosol, mitochondrion, nucleus	31.2	27.94
CDY41196	Canola	nucleus	32.36	27.75
AT2G44130.1	Thale cress	cytosol	32.94	27.63
CDX79780	Canola	cytosol	33.53	27.51
GSMUA_Achr6P06940_001	Banana	cytosol	29.15	27.03
TraesCS4D01G085000.1	Wheat	plastid	32.07	27.03
Bra007494.1-P	Field mustard	nucleus	32.94	26.9
AT3G59940.1	Thale cress	cytosol	32.65	26.79
Bra000342.1-P	Field mustard	cytosol	31.2	26.68
Bra004807.1-P	Field mustard	cytosol	33.24	26.57

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102600264	Gene3D:2.120.10.80	MapMan:9.2.1.1.2	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	UniProt:M1C6Q7	PFAM:PF01344	PFAM:PF12937	EnsemblPlantsGene:PGSC0003DMG400023703	PGSC:PGSC0003DMG400023703
EnsemblPlants:PGSC0003DMT400060940	PANTHER:PTHR24412	PANTHER:PTHR24412:SF383	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI000294A00F	RefSeq:XP_006351356.1	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023703]

Coordinates

chr10:-:57368001..57369328

Molecular Weight (calculated)

38139.1 Da

IEP (calculated)

6.248

GRAVY (calculated)

-0.327

Length

343 amino acids

Sequence
(BLAST)

001: MNQNEFTELV PGLPEDIALE CLTRLHYSTH GVASRVCRRW CRILQSKAFY YHRKQTGFTH KAACLVQALP SPVESKPTGQ PRYAISVFDL VSGIWDRVDP
101: IPKYPDGLPM FCQIATTEGK LIVMGGWNPA SWNPIKDVFV YDFMTRRWNQ CKDMPEARSF FAMGAAGGKV FIAGGHDESK NALSSAWVFD ISSNEWTELP
201: RMSEERDECE GVIIGSDFCV VSGYDTETQG RFKSSAELYE LSTGQWRRVE DAWRSSQCPR ACVGVGKNGN LTCWAESDPN VKVGACGVDL GDRTLVTGSA
301: YQGAPHGFFF VENNKKGQNS KLTKINVPDE FSGFVQSGCC VEI

Best Arabidopsis Sequence Match ( AT2G44130.1 )
(BLAST)

001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV

Arabidopsis Description

F-box/kelch-repeat protein At2g44130 [Source:UniProtKB/Swiss-Prot;Acc:O80582]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.