CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67566
CDX68112
CDX73212
CDX73567
CDX74991
CDX76219
CDX78161
CDX80590
CDX85931
CDX87650
CDX91331
CDY13306
CDY13521
CDY18463
CDY18464
CDY39073
CDY66761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59940.1	CDX68112	AT1G75950.1	12795696
AT3G59940.1	CDX73212	AT1G75950.1	12795696
AT3G59940.1	CDX80590	AT1G75950.1	12795696
AT3G59940.1	CDX85931	AT1G75950.1	12795696
AT3G59940.1	CDX87650	AT1G75950.1	12795696
AT3G59940.1	CDY13521	AT1G75950.1	12795696
AT3G59940.1	CDY39073	AT1G75950.1	12795696
AT3G59940.1	CDX68112	AT1G75950.1	21798944
AT3G59940.1	CDX73212	AT1G75950.1	21798944
AT3G59940.1	CDX80590	AT1G75950.1	21798944
AT3G59940.1	CDX85931	AT1G75950.1	21798944
AT3G59940.1	CDX87650	AT1G75950.1	21798944
AT3G59940.1	CDY13521	AT1G75950.1	21798944
AT3G59940.1	CDY39073	AT1G75950.1	21798944
AT3G59940.1	CDX74991	AT2G37040.1	21798944
AT3G59940.1	CDX91331	AT2G37040.1	21798944
AT3G59940.1	CDY18463	AT2G37040.1	21798944
AT3G59940.1	CDY18464	AT2G37040.1	21798944
AT3G59940.1	CDX67566	AT3G53260.1	21798944
AT3G59940.1	CDX73567	AT3G53260.1	21798944
AT3G59940.1	CDX76219	AT3G53260.1	21798944
AT3G59940.1	CDX78161	AT3G53260.1	21798944
AT3G59940.1	CDY13306	AT3G53260.1	21798944
AT3G59940.1	CDY66761	AT3G53260.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41196	Canola	nucleus	88.06	88.5
AT3G59940.1	Thale cress	cytosol	72.39	69.62
CDY17882	Canola	cytosol, mitochondrion, nucleus	58.21	61.1
CDX79780	Canola	cytosol	60.45	58.13
CDX83439	Canola	cytosol	55.47	57.18
CDX95589	Canola	cytosol	54.23	55.9
VIT_05s0094g01590.t01	Wine grape	cytosol	32.59	35.89
TraesCS4B01G087600.1	Wheat	cytosol	31.84	34.78
TraesCS4A01G228600.1	Wheat	cytosol	31.59	34.51
Zm00001d049016_P001	Maize	cytosol	31.84	34.41
TraesCS4B01G087800.1	Wheat	cytosol	31.59	34.32
TraesCS4A01G228800.1	Wheat	cytosol	31.59	34.32
TraesCS4D01G084900.1	Wheat	cytosol	31.34	34.05
HORVU4Hr1G014970.1	Barley	cytosol	31.09	33.88
Zm00001d007274_P001	Maize	cytosol	31.09	33.51
PGSC0003DMT400060940	Potato	cytosol	28.36	33.24
EES09544	Sorghum	cytosol	31.59	33.16
EES08254	Sorghum	cytosol	30.6	32.2
Solyc10g080610.1.1	Tomato	cytosol	27.36	31.98
Os11t0246200-00	Rice	cytosol	30.1	31.59
TraesCS4D01G085000.1	Wheat	plastid	31.34	30.96
Zm00001d050815_P001	Maize	nucleus	28.36	30.56
KRH58914	Soybean	extracellular, plasma membrane	29.1	30.39
GSMUA_Achr6P06940_001	Banana	cytosol	27.61	30.0
OQU85159	Sorghum	cytosol	28.61	29.95
CDY58028	Canola	cytosol	24.88	27.93
CDY53309	Canola	cytosol	24.63	27.65
Os02t0563000-00	Rice	cytosol	26.87	27.62
CDY69686	Canola	cytosol	24.38	27.45
CDY36579	Canola	cytosol	24.38	27.37
CDY39979	Canola	cytosol	24.13	27.02
CDX87309	Canola	cytosol	24.13	27.02
GSMUA_Achr6P28790_001	Banana	cytosol	9.45	23.03

Protein Annotations

Gene3D:2.120.10.80	MapMan:9.2.1.1.2	EnsemblPlants:CDX71859	ProteinID:CDX71859	ProteinID:CDX71859.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00155589001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414
PANTHER:PTHR24414:SF34	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EF06F2
SEG:seg	:	:	:	:	:

Description

BnaC08g30150D

Coordinates

chrLK031795:-:868638..869906

Molecular Weight (calculated)

44513.9 Da

IEP (calculated)

5.158

GRAVY (calculated)

-0.207

Length

402 amino acids

Sequence
(BLAST)

001: MSASEEFNVT GGFQSRRDLI SGLPEELATE CLVRVPFEFH SSLKSVSRLW QSLISDRSFD RERRRAGKDE SLLCLVQPLT SPSYPVNSSH QQLQQPRVIG
101: TPLYGLSVYN ATLDTWHRVA IPERIPLFCE CVALQDAGKV LLIGGWDPET LQPVKDVFVL DFSAAGRSWR RGKPMSAARS FFACAAVGPT KVYVAGGHDD
201: QKNAIKSAEV YDVEKDEWVT IPPMTEGRDE CHGFSMAADL GFCVLSGYGT ETQGQFRSDA EIYDPVSNSW SVIENVWPFP DLSPRGRTAA VIESAGDFRG
301: CKLWCFVDSQ RQCQPRWEVE DDSMKWRLVM ETIRLPVTTM TSVFAASLSG QAVAMIGGGG EESGTMMMMM MTKGEKNGGK WSHVSTPSVF SSLPFSYASI
401: YV

Best Arabidopsis Sequence Match ( AT3G59940.1 )
(BLAST)

001: MGVSKKKSGE IRGDLIPGLP EELAIECLVR VPFQFHSSIK SVCRSWKCVI SSRSFIKERI GFGKAESLLC LVQPLTSPPS PAMMEGGEMS QKKKEEEEGE
101: SQMTQQLLQP RITGTPLYGL SVYNATLDTW HRVAIPERIP LFCECVAIQD AGKVLLIGGW DPETLQPVRD VFVLDFFAGE GSGRRFRRGR PMSAARSFFA
201: CASVGSTKVY VAGGHDDQKN ALRSAEVYDV EKDEWSMLPP MTEGRDECHG FSMATDPGFC VLSGYGTETQ GQFRSDGEIY DPITNSWSTI ENVWPFPDLS
301: PRGRTAAAAA EFPGDFRGCR LWCFIDSERQ SQPHWEVEDD SMKWKVIMDT IRLPVTTMTS VFAGSLSGQA VAMIGGGGEE SGTMMVKTTA EKNGGKWSHV
401: NTPSGFSSLP FSCSSIYV

Arabidopsis Description

SKIP20F-box/kelch-repeat protein SKIP20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.