Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85931 | Canola | cytosol | 100.0 | 100.0 |
| Bra003735.1-P | Field mustard | cytosol | 100.0 | 94.38 |
| CDY13521 | Canola | cytosol | 97.35 | 91.88 |
| CDY39073 | Canola | cytosol | 97.35 | 91.88 |
| AT1G75950.1 | Thale cress | cytosol | 94.04 | 88.75 |
| CDX73212 | Canola | cytosol | 94.04 | 88.2 |
| CDX87650 | Canola | cytosol | 92.05 | 86.34 |
| CDY40610 | Canola | cytosol | 75.5 | 73.08 |
| CDX93698 | Canola | cytosol | 74.17 | 71.79 |
| CDY44209 | Canola | cytosol | 76.16 | 71.43 |
| CDX80590 | Canola | cytosol | 75.5 | 70.81 |
| CDY29370 | Canola | cytosol | 74.83 | 70.19 |
| CDY40611 | Canola | cytosol | 68.87 | 69.33 |
| CDX93699 | Canola | cytosol | 71.52 | 67.5 |
| CDX77280 | Canola | cytosol | 67.55 | 64.15 |
| CDY69121 | Canola | cytosol | 54.97 | 63.36 |
| CDY16470 | Canola | cytosol | 65.56 | 62.26 |
| CDX89042 | Canola | cytosol | 64.9 | 61.64 |
| CDY63159 | Canola | cytosol | 63.58 | 59.63 |
| CDY67544 | Canola | cytosol | 63.58 | 59.63 |
| CDY01389 | Canola | cytosol | 62.91 | 59.01 |
| CDY45767 | Canola | cytosol | 58.28 | 57.14 |
| CDY03015 | Canola | cytosol | 55.63 | 55.63 |
| CDY43408 | Canola | cytosol | 54.97 | 54.61 |
| CDY68971 | Canola | cytosol | 54.3 | 53.95 |
| CDY14922 | Canola | cytosol | 59.6 | 53.57 |
| CDY04140 | Canola | cytosol | 54.3 | 51.57 |
| CDY17409 | Canola | cytosol | 53.64 | 50.94 |
| CDX96963 | Canola | cytosol | 58.94 | 47.09 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:A0A078D9K2 | EnsemblPlants:CDX68112 | ProteinID:CDX68112 | ProteinID:CDX68112.1 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00099354001 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 |
| InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniPathway:UPA00143 | UniParc:UPI0004EF192E | SEG:seg |
Description
BnaA07g21520D
Coordinates
chrLK031787:-:3928394..3929669
Molecular Weight (calculated)
16932.9 Da
IEP (calculated)
4.165
GRAVY (calculated)
-0.381
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTKKIVLKS SDGESFEVDE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK KHAVDGGGSS DDDLKAWDAE FMKIDQATLF ELILAANYLN
101: IKNLLDLTCQ TVADMIKGKT PEEIRTTFNI KNDFSPEEEE EVRRENQWAF E
101: IKNLLDLTCQ TVADMIKGKT PEEIRTTFNI KNDFSPEEEE EVRRENQWAF E
001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
Arabidopsis Description
SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.