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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G02230.1 CDX68112 AT1G75950.1 12795696
AT2G02230.1 CDX73212 AT1G75950.1 12795696
AT2G02230.1 CDX80590 AT1G75950.1 12795696
AT2G02230.1 CDX85931 AT1G75950.1 12795696
AT2G02230.1 CDX87650 AT1G75950.1 12795696
AT2G02230.1 CDY13521 AT1G75950.1 12795696
AT2G02230.1 CDY39073 AT1G75950.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024827.1-P Field mustard cytosol 94.56 88.53
CDY03062 Canola cytosol 85.71 79.0
CDY17602 Canola cytosol 77.55 73.08
CDY17601 Canola cytosol 70.41 70.17
CDY03060 Canola cytosol 76.19 69.57
CDY09383 Canola cytosol 69.05 66.78
CDY03059 Canola cytosol 74.83 66.07
CDY15823 Canola cytosol 72.11 63.86
AT2G02230.1 Thale cress cytosol 64.29 56.25
CDY62670 Canola cytosol 5.44 55.17
CDY03058 Canola cytosol 49.32 50.7
CDY17600 Canola cytosol 48.64 50.0
CDY09382 Canola cytosol 45.24 50.0
CDY70803 Canola cytosol 44.9 49.62
CDY03057 Canola cytosol 39.46 48.95
CDY09378 Canola cytosol 44.9 48.89
CDY17599 Canola cytosol 46.94 48.76
CDY09379 Canola cytosol 40.14 47.58
CDY09375 Canola cytosol 46.94 47.26
CDY65051 Canola cytosol 35.71 46.46
CDY63170 Canola cytosol 39.12 46.18
CDY09380 Canola cytosol 47.28 43.85
CDY68805 Canola cytosol 25.51 43.35
CDY03056 Canola cytosol 23.13 43.31
CDY09376 Canola cytosol 28.57 43.3
VIT_00s0214g00130.t01 Wine grape cytosol 40.14 42.6
CDY24793 Canola cytosol 20.41 41.38
Solyc04g050990.2.1 Tomato cytosol 41.5 41.08
PGSC0003DMT400031292 Potato cytosol 40.82 40.4
KRG92586 Soybean cytosol, plastid 41.5 40.26
CDX87293 Canola cytosol 35.03 40.23
CDY39994 Canola cytosol 35.03 40.23
VIT_00s0214g00150.t01 Wine grape cytosol 41.84 40.2
Solyc05g055870.2.1 Tomato cytosol 41.5 39.61
PGSC0003DMT400060018 Potato cytosol 40.82 38.34
CDY72024 Canola plastid 34.69 37.5
VIT_00s0214g00060.t01 Wine grape cytosol 36.39 37.28
CDX95006 Canola cytosol 35.03 37.05
KRH68844 Soybean cytosol 39.8 36.91
CDX88110 Canola cytosol 15.31 36.89
CDY31110 Canola plastid 33.67 36.67
CDY71953 Canola cytosol 34.35 36.33
VIT_00s0214g00090.t01 Wine grape cytosol 38.44 33.53
VIT_00s0214g00040.t01 Wine grape cytosol, plastid 39.8 33.52
CDY38992 Canola cytosol 31.97 33.22
CDY54100 Canola cytosol 31.63 32.86
CDY65052 Canola cytosol 46.94 31.94
CDX80451 Canola cytosol, endoplasmic reticulum, plasma membrane 21.77 29.63
CDY38901 Canola cytosol 26.53 28.06
CDY32595 Canola cytosol 27.21 27.68
CDY63226 Canola plastid 25.85 26.21
CDY45973 Canola cytosol 25.85 26.21
CDY57080 Canola cytosol 24.83 25.89
CDX73584 Canola cytosol 25.17 25.52
CDX98047 Canola cytosol 24.83 25.44
CDX78140 Canola cytosol 25.85 25.25
CDY16361 Canola extracellular 16.33 25.0
CDY47354 Canola cytosol 24.15 24.48
CDY42484 Canola cytosol 23.47 24.21
CDY49201 Canola cytosol 23.81 24.14
CDX89095 Canola cytosol 23.13 23.78
CDX79690 Canola cytosol 23.13 23.13
CDX84551 Canola cytosol 22.79 22.79
CDX95004 Canola peroxisome, plasma membrane, vacuole 21.09 19.2
Protein Annotations
EnsemblPlants:CDY17605EnsemblPlantsGene:GSBRNA2T00001812001Gene3D:1.20.1280.50GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810InterPro:PP2-likePANTHER:PTHR32278PANTHER:PTHR32278:SF6
PFAM:PF00646PFAM:PF14299PFscan:PS50181ProteinID:CDY17605ProteinID:CDY17605.1SEG:seg
SMART:SM00256SUPFAM:SSF81383UniParc:UPI0004EDCDE1UniProt:A0A078FSW1MapMan:35.1:
Description
BnaA06g34240DBnaA06g34240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSW1]
Coordinates
chrLK032076:+:71465..72590
Molecular Weight (calculated)
32240.1 Da
IEP (calculated)
4.827
GRAVY (calculated)
-0.422
Length
294 amino acids
Sequence
(BLAST)
001: MEQIQVGGGS SRNGAARLDT LPEDCISMVV SHTSPRDACV VASVSKTVKS AAESDLVWDK FLPPELSSLV PPRSLDFSSK KEIYMSLAND SVLIDDGKKS
101: FWLEKGSGKK CYMLSAMDLK ITWSDCPAYW KWKKDPESKF EKVAKLRHVC WFEIRGKISC GMLSKGTHYS VYAVLKIGGS GSRGLDDTPM EALVGFAGEE
201: AASKTFVLLE PKGTYPRGGY SSGSFREVST GVEEPKERGD GWSEVKLGNF YNGDGGCDDD GNEIEFSIMG TEQEDWKSGL IFQGIEIRPM NEGD
Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)
001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN
Arabidopsis Description
PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.