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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_16s0098g00600.t01
VIT_17s0000g06020.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G02230.1 VIT_18s0001g14860.t01 AT5G42190.1 12795696
AT2G02300.1 VIT_17s0000g06020.t01 AT3G47620.1 21798944
AT2G02300.1 VIT_16s0098g00600.t01 AT3G49580.1 21798944
AT2G02360.1 VIT_18s0001g14860.t01 AT5G42190.1 14749489
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_00s0214g00130.t01 Wine grape cytosol 51.22 53.07
VIT_00s0214g00040.t01 Wine grape cytosol, plastid 61.32 50.43
VIT_00s0214g00150.t01 Wine grape cytosol 52.61 49.35
VIT_00s0214g00090.t01 Wine grape cytosol 55.4 47.18
AT5G24560.1 Thale cress cytosol 31.01 45.64
Solyc04g050990.2.1 Tomato cytosol 47.04 45.45
KRG92586 Soybean cytosol, plastid 47.04 44.55
PGSC0003DMT400031292 Potato cytosol 45.99 44.44
Solyc05g055870.2.1 Tomato cytosol 47.39 44.16
AT2G02360.1 Thale cress nucleus 41.81 44.12
Bra024822.1-P Field mustard cytosol 33.1 43.58
VIT_00s0214g00160.t01 Wine grape cytosol 47.04 43.13
PGSC0003DMT400060018 Potato cytosol 47.04 43.13
CDY17599 Canola cytosol 42.16 42.76
CDY65051 Canola cytosol 33.45 42.48
VIT_14s0060g02020.t01 Wine grape cytosol 41.81 42.11
VIT_14s0060g02000.t01 Wine grape cytosol 42.16 42.01
CDX88110 Canola cytosol 17.77 41.8
CDY03057 Canola cytosol 34.49 41.77
CDY03056 Canola cytosol 22.65 41.4
CDY24793 Canola cytosol 20.91 41.38
KRH68844 Soybean cytosol 45.3 41.01
CDY70803 Canola cytosol 37.98 40.98
CDY09382 Canola cytosol 37.98 40.98
Bra026608.1-P Field mustard cytosol 39.37 40.65
VIT_14s0060g01990.t01 Wine grape cytosol 39.02 40.43
CDY09378 Canola cytosol 37.98 40.37
Bra024823.1-P Field mustard cytosol 40.07 40.21
CDY03058 Canola cytosol 40.07 40.21
CDY17600 Canola cytosol 40.07 40.21
AT2G02250.1 Thale cress cytosol 42.86 39.68
CDY09376 Canola cytosol 26.48 39.18
CDY09379 Canola cytosol 33.8 39.11
CDY63170 Canola cytosol 33.45 38.55
Bra026603.1-P Field mustard cytosol 37.98 37.46
CDY09375 Canola cytosol 37.98 37.33
AT2G02240.1 Thale cress cytosol 40.77 36.56
CDY17605 Canola cytosol 37.28 36.39
CDY17601 Canola cytosol 37.28 36.27
CDY09383 Canola cytosol 38.33 36.18
CDY09380 Canola cytosol 39.72 35.96
CDY68805 Canola cytosol 21.6 35.84
AT2G02340.1 Thale cress cytosol 37.98 35.74
CDY17602 Canola cytosol 38.68 35.58
Bra026604.1-P Field mustard cytosol 39.72 35.4
AT2G02350.2 Thale cress cytosol, mitochondrion 36.24 35.37
VIT_05s0051g00080.t01 Wine grape cytosol 32.4 35.23
Bra024825.1-P Field mustard cytosol 35.19 35.19
Bra026609.1-P Field mustard cytosol 39.72 34.13
CDY15823 Canola cytosol 39.37 34.04
AT2G02230.1 Thale cress cytosol 39.72 33.93
CDY03060 Canola cytosol 37.98 33.85
AT2G02300.1 Thale cress cytosol 33.45 33.8
Bra024827.1-P Field mustard cytosol 36.93 33.76
CDY03059 Canola cytosol 39.02 33.63
CDY03062 Canola cytosol 37.28 33.54
Bra026606.1-P Field mustard plasma membrane, vacuole 39.37 32.38
AT2G02310.1 Thale cress cytosol 34.49 32.25
AT2G02320.1 Thale cress mitochondrion 34.15 31.92
Bra026605.1-P Field mustard cytosol 28.92 31.8
Bra024824.1-P Field mustard cytosol 37.28 31.75
CDX80451 Canola cytosol, endoplasmic reticulum, plasma membrane 20.91 27.78
CDY65052 Canola cytosol 38.68 25.69
VIT_16s0100g00520.t01 Wine grape cytosol 24.39 25.09
VIT_15s0048g01930.t01 Wine grape cytosol 24.39 24.22
VIT_08s0007g04190.t01 Wine grape cytosol 25.09 24.08
VIT_02s0025g04380.t01 Wine grape cytosol 24.74 22.98
Protein Annotations
EntrezGene:100242049wikigene:100242049MapMan:35.1ProteinID:CCB60973ProteinID:CCB60973.1ncoils:Coil
InterPro:F-box-like_dom_sfUniProt:F6I206EMBL:FN596523GO:GO:0003674GO:GO:0005488GO:GO:0005515
EntrezGene:LOC100242049wikigene:LOC100242049PFAM:PF14299InterPro:PP2-likePANTHER:PTHR32278PANTHER:PTHR32278:SF2
SUPFAM:SSF81383TIGR:TC68783UniParc:UPI00015CD986ArrayExpress:VIT_00s0214g00060EnsemblPlantsGene:VIT_00s0214g00060EnsemblPlants:VIT_00s0214g00060.t01
unigene:Vvi.25819unigene:Vvi.7067RefSeq:XP_002270223RefSeq:XP_002270223.1RefSeq:XP_002270262RefSeq:XP_002270262.1
SEG:seg:::::
Description
No Description!
Coordinates
chrUn:+:13348725..13350330
Molecular Weight (calculated)
33142.5 Da
IEP (calculated)
5.874
GRAVY (calculated)
-0.405
Length
287 amino acids
Sequence
(BLAST)
001: MDGNSNNRVE EGNFSQSDTG ADFSTLPEAC IVYILALTSP PDVCRMRAVA QWLLPAVESD ALWLRFLPDD YQQILARSAE PPSLSDSSSK KELFFRLCDS
101: PLLIDEGKKM FWLEKRSGKK CFMLSARDLA IIWGSTPRYW RWFSVPESRF SEIAYLNDVC WLEVKGVINA CMLSPRTNYA AYLVFNLKTN SYGFEDVVVK
201: SSIKIGDETT ARRSYLKRRM RHRRELHSAE ERIPYPTQRK DGWLEIELGE FLSRGGEDIE VEITQLDSHW KRGLMVEGIE FRPKDNL
Best Arabidopsis Sequence Match ( AT2G02250.1 )
(BLAST)
001: MIQSTMGHKQ SVDSRGKGRK VPGSSSMVQK HRVESSGGAI ISGPSLFDNL PEDCISNIIS FTSPRDACVA ASVSKTFESA VNSDSVWDKF LPSDYSSLVP
101: PSRVFSSKKE LYFAICDNPV LVEDGGKSFW LEKENGKKCF MLSPKKSMWI TWVSTPQYWR WISIPEARFE EVPELLNVCW FEVRGGMNTK ELSPGTRYSA
201: YIVFKTKNGC PNLGDVPVEA TVGLVGQESS QRHIYFVGPS DQRRDRETRD VTRPTKRKDG WMEAELGQFF NESGCDVVDT SILEIKTPYW KRGLIIQGIE
301: FRPTKSLFYI
Arabidopsis Description
PP2B2Putative F-box protein PP2-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVR5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.