Factsheet for VIT_14s0060g02020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g03680.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56250.1	VIT_07s0005g03680.t01	AT5G44110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g02000.t01	Wine grape	cytosol	88.77	87.85
KRG96762	Soybean	cytosol	60.0	59.58
VIT_14s0060g01990.t01	Wine grape	cytosol	57.89	59.57
KRH68480	Soybean	cytosol	59.3	58.88
KRH33867	Soybean	cytosol	54.39	58.71
PGSC0003DMT400063744	Potato	cytosol	55.79	56.38
Solyc01g100010.2.1	Tomato	cytosol	54.74	56.12
Solyc01g100000.2.1	Tomato	cytosol	51.23	53.87
CDY31110	Canola	plastid	50.88	53.7
Bra030758.1-P	Field mustard	cytosol	51.23	53.68
CDY72024	Canola	plastid	51.23	53.68
AT1G56240.1	Thale cress	cytosol	52.63	52.82
GSMUA_Achr1P20450_001	Banana	plastid	47.37	52.33
Bra018579.1-P	Field mustard	cytosol	50.88	52.16
CDY71953	Canola	cytosol	50.88	52.16
AT1G09155.1	Thale cress	cytosol	52.28	51.56
AT1G56250.1	Thale cress	cytosol	50.88	51.42
Bra038174.1-P	Field mustard	cytosol	50.88	51.24
CDY54100	Canola	cytosol	50.18	50.53
GSMUA_Achr1P05730_001	Banana	cytosol	46.32	49.44
CDX95006	Canola	cytosol	48.07	49.28
CDY38992	Canola	cytosol	48.77	49.12
GSMUA_Achr1P05750_001	Banana	cytosol	47.37	48.91
GSMUA_Achr6P36620_001	Banana	cytosol	44.21	48.65
VIT_00s0214g00130.t01	Wine grape	cytosol	44.56	45.85
TraesCS4B01G262300.1	Wheat	cytosol	41.75	45.08
TraesCS4D01G262300.1	Wheat	cytosol	41.05	44.15
VIT_00s0214g00150.t01	Wine grape	cytosol	45.61	42.48
GSMUA_Achr1P05720_001	Banana	cytosol	41.75	42.35
TraesCS5B01G558800.1	Wheat	nucleus	43.16	41.84
VIT_00s0214g00060.t01	Wine grape	cytosol	42.11	41.81
HORVU2Hr1G104500.6	Barley	cytosol	38.25	41.6
TraesCS7A01G063600.1	Wheat	cytosol, nucleus, peroxisome	38.25	41.6
TraesCS6D01G369200.1	Wheat	cytosol	42.11	40.68
TraesCS6A01G384100.1	Wheat	cytosol	42.11	40.4
TraesCS6B01G423500.1	Wheat	cytosol	42.11	40.4
TraesCS6D01G369100.1	Wheat	cytosol	42.11	40.4
EES05998	Sorghum	cytosol	39.3	40.29
VIT_00s0214g00160.t01	Wine grape	cytosol	44.21	40.26
VIT_05s0051g00080.t01	Wine grape	cytosol	37.19	40.15
TraesCS6A01G384000.2	Wheat	cytosol	41.4	39.73
TraesCS3B01G018900.1	Wheat	cytosol	41.75	39.67
GSMUA_Achr8P03670_001	Banana	nucleus	38.95	38.81
GSMUA_Achr5P10170_001	Banana	cytosol	21.75	38.75
TraesCS6B01G423200.1	Wheat	cytosol	41.05	38.74
Os02t0813350-01	Rice	cytosol	40.35	38.72
TraesCS5D01G566000.2	Wheat	cytosol	42.11	38.59
TraesCS7D01G058100.1	Wheat	cytosol	35.44	38.55
TraesCS6D01G368900.1	Wheat	cytosol	41.4	38.44
TraesCS6D01G366600.1	Wheat	cytosol	42.81	38.36
TraesCS6B01G421100.1	Wheat	cytosol	42.46	38.29
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	46.67	38.11
TraesCS6A01G383900.1	Wheat	cytosol	42.11	38.1
HORVU6Hr1G089430.1	Barley	cytosol, plastid	42.11	37.85
KXG28410	Sorghum	cytosol	35.79	37.78
Os12t0131400-01	Rice	nucleus	40.0	37.75
Os02t0813083-00	Rice	extracellular	15.09	37.72
TraesCS5B01G560100.1	Wheat	cytosol	41.4	37.7
TraesCS6D01G369000.1	Wheat	cytosol	41.4	37.7
TraesCS6A01G381900.1	Wheat	cytosol	41.75	37.66
TraesCS6B01G423400.1	Wheat	cytosol	41.4	37.58
GSMUA_Achr9P02770_001	Banana	nucleus	37.54	37.54
Os02t0813166-00	Rice	cytosol, plastid	34.39	37.4
Os02t0813000-00	Rice	cytosol	30.18	37.39
KXG31332	Sorghum	cytosol	40.0	37.38
EES05996	Sorghum	cytosol	36.49	37.28
TraesCS5B01G560000.1	Wheat	cytosol	41.05	37.26
VIT_00s0214g00090.t01	Wine grape	cytosol	43.86	37.09
TraesCS4A01G041300.1	Wheat	plastid	41.4	36.88
Zm00001d053172_P001	Maize	cytosol	38.25	36.82
TraesCS4A01G320400.1	Wheat	cytosol	32.98	36.72
HORVU7Hr1G012610.1	Barley	cytosol	37.89	36.61
TraesCS5B01G559800.1	Wheat	cytosol	38.6	36.42
Zm00001d018452_P001	Maize	cytosol, extracellular	38.6	36.42
TraesCS7D01G518300.2	Wheat	cytosol	18.25	36.36
KXG31333	Sorghum	cytosol	38.6	36.18
TraesCS6B01G422300.1	Wheat	cytosol	37.54	36.15
TraesCS7A01G530500.1	Wheat	extracellular	17.89	35.92
HORVU6Hr1G090000.1	Barley	cytosol, plastid	42.46	35.8
OQU85929	Sorghum	cytosol	35.79	35.79
Zm00001d051936_P001	Maize	cytosol	39.3	35.78
TraesCS7D01G351500.1	Wheat	cytosol	36.14	35.76
HORVU6Hr1G090010.2	Barley	cytosol, nucleus, plastid	42.46	35.59
TraesCS7A01G371000.1	Wheat	cytosol	35.79	35.29
TraesCS7A01G063200.1	Wheat	cytosol	13.33	35.19
Os04t0280500-00	Rice	cytosol	18.6	35.1
TraesCS5B01G558600.1	Wheat	cytosol	33.68	35.04
HORVU7Hr1G072570.3	Barley	cytosol	36.14	35.03
TraesCS3D01G079700.1	Wheat	cytosol	36.49	35.02
TraesCS7B01G205100.1	Wheat	cytosol	36.49	35.02
TraesCS6B01G422400.1	Wheat	cytosol	36.49	34.9
TraesCS7D01G300300.1	Wheat	cytosol	36.49	34.9
TraesCS3B01G094500.1	Wheat	cytosol	37.19	34.64
EES05994	Sorghum	cytosol	41.05	34.62
TraesCS6D01G368000.1	Wheat	cytosol	37.19	34.53
TraesCS3A01G079300.1	Wheat	cytosol	36.84	34.43
TraesCS4A01G319200.1	Wheat	cytosol	38.6	34.38
TraesCS7A01G304800.1	Wheat	cytosol	35.79	34.34
HORVU3Hr1G014270.1	Barley	cytosol	37.54	34.29
Os02t0812500-01	Rice	cytosol	39.65	34.04
Os08t0150700-01	Rice	cytosol	35.44	33.78
TraesCSU01G190600.1	Wheat	cytosol, mitochondrion	37.89	33.75
TraesCSU01G197600.1	Wheat	cytosol, mitochondrion	37.89	33.75
Zm00001d032787_P001	Maize	cytosol	34.74	33.67
TraesCS5D01G035000.1	Wheat	cytosol, mitochondrion	39.3	33.33
HORVU6Hr1G089480.1	Barley	cytosol, extracellular	19.65	32.75
TraesCS6D01G043900.1	Wheat	cytosol	34.04	32.33
HORVU0Hr1G021610.3	Barley	cytosol	36.49	32.0
TraesCS3D01G083600.1	Wheat	cytosol	34.39	31.72
Zm00001d024621_P001	Maize	cytosol	34.04	31.6
Zm00001d018451_P001	Maize	cytosol	37.89	31.4
TraesCS6D01G367900.1	Wheat	cytosol	31.58	31.25
TraesCS7D01G519100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	33.68	31.17
OQU85933	Sorghum	cytosol, mitochondrion	28.07	31.13
CDY62670	Canola	cytosol	3.16	31.03
TraesCS3B01G097600.1	Wheat	cytosol	29.47	30.32
TraesCS7B01G449100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.63	30.19
TraesCS3A01G082500.1	Wheat	plastid	22.11	30.0
TraesCS7A01G531700.1	Wheat	cytosol	32.98	29.84
HORVU5Hr1G124090.2	Barley	cytosol	31.23	29.37
TraesCS7D01G518400.1	Wheat	cytosol	32.28	28.93
TraesCS7B01G448100.1	Wheat	cytosol, extracellular	31.93	28.89
TraesCS6B01G422200.1	Wheat	mitochondrion	24.21	28.63
Os12t0129700-01	Rice	cytosol	35.79	27.35
TraesCS7A01G530600.1	Wheat	cytosol, mitochondrion	32.28	26.82
Os02t0812600-00	Rice	extracellular	40.7	25.44
VIT_16s0100g00520.t01	Wine grape	cytosol	24.21	24.73
OQU92610	Sorghum	mitochondrion	32.28	24.66
VIT_15s0048g01930.t01	Wine grape	cytosol	24.56	24.22
VIT_02s0025g04380.t01	Wine grape	cytosol	25.96	23.95
VIT_08s0007g04190.t01	Wine grape	cytosol	24.91	23.75
CDX95004	Canola	peroxisome, plasma membrane, vacuole	23.51	20.74
OQU85932	Sorghum	mitochondrion	35.09	17.83
TraesCS6D01G368100.1	Wheat	cytosol	32.98	16.79

Protein Annotations

EntrezGene:100256275	wikigene:100256275	MapMan:35.1	ProteinID:CCB61870	ProteinID:CCB61870.1	InterPro:F-box-like_dom_sf
UniProt:F6I4N3	EMBL:FN596746	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EntrezGene:LOC100256275
wikigene:LOC100256275	PFAM:PF14299	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF15	SUPFAM:SSF81383
UniParc:UPI00015C93E2	ArrayExpress:VIT_14s0060g02020	EnsemblPlantsGene:VIT_14s0060g02020	EnsemblPlants:VIT_14s0060g02020.t01	RefSeq:XP_002279245	RefSeq:XP_002279245.1

Description

No Description!

Coordinates

chr14:-:1613773..1615727

Molecular Weight (calculated)

32619.3 Da

IEP (calculated)

7.264

GRAVY (calculated)

-0.368

Length

285 amino acids

Sequence
(BLAST)

001: MECLGFNKLP EGCVSIILSL TSPPDACKSS LVSPMFRAAA ESDVVWERFL PADYHDILCR LVEPLVCSSR KELFLRLCDP ILIDGGSKSF RLDKWSGKKS
101: YLLSARELSI TWSNDPMYWS WRSTPESRFS HVAELRTMCW LEIHGKIRTQ MLSPNTKYGA YLIMKISNRA YGLDLMPSEI SVEVSNSTQV CNGTAYLRCS
201: DSKNKQMERL FYGNRREMLR SRVIEGDGRV PCEREDGWME LELGDFFNGE GDEEVRMSLR EVKGYHLKGG LIIEGIEVRP KDSRK

Best Arabidopsis Sequence Match ( AT1G09155.1 )
(BLAST)

001: MMLPEACVAT ILSFTTPADT ISSAAVSSVF RVAGDSDFVW EKFLPTDYCH VISRSTDPHR IFSSKKELYR CLCESILIDN GRKIFKIEKL SGKISYILSS
101: RDLSITWSDQ RHYWSWSPRS DSRFSEGVQL IMTDWLEIIG KIQTGALSPN TNYGAYLIMK VTSRAYGLDL VPAETSIKVG NGEKKIKSTY LSCLDNKKQQ
201: MERVFYGQRE QRMATHEVVR SHRREPEVRD DGWMEIELGE FETGSGEGDD DKEVVMSLTE VKGYQLKGGI AIDGIEVRPK PLKVRAGTN

Arabidopsis Description

PP2B15F-box protein PP2-B15 [Source:UniProtKB/Swiss-Prot;Acc:O80494]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.