Factsheet for Bra038174.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 2
golgi 2
plasma membrane 3
endoplasmic reticulum 2
vacuole 2
cytosol 3
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, peroxisome, plasma membrane, plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027530.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56250.1	Bra027530.1-P	AT5G44110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54100	Canola	cytosol	97.88	97.88
CDY38992	Canola	cytosol	96.47	96.47
AT1G56250.1	Thale cress	cytosol	81.98	82.27
AT1G56240.1	Thale cress	cytosol	82.33	82.04
Bra030758.1-P	Field mustard	cytosol	66.43	69.12
Bra018579.1-P	Field mustard	cytosol	65.37	66.55
VIT_14s0060g02020.t01	Wine grape	cytosol	51.24	50.88
VIT_14s0060g02000.t01	Wine grape	cytosol	51.59	50.69
KRG96762	Soybean	cytosol	47.7	47.04
KRH33867	Soybean	cytosol	43.46	46.59
KRH68480	Soybean	cytosol	46.64	45.99
PGSC0003DMT400063744	Potato	cytosol	45.23	45.39
Solyc01g100010.2.1	Tomato	cytosol	43.82	44.6
Solyc01g100000.2.1	Tomato	cytosol	41.7	43.54
Bra024822.1-P	Field mustard	cytosol	27.56	35.78
Bra035198.1-P	Field mustard	cytosol	31.1	34.38
Bra024823.1-P	Field mustard	cytosol	34.28	33.92
Bra026608.1-P	Field mustard	cytosol	32.51	33.09
Bra024825.1-P	Field mustard	cytosol	32.16	31.71
Bra026604.1-P	Field mustard	cytosol	35.69	31.37
Bra026603.1-P	Field mustard	cytosol	32.16	31.27
Bra024827.1-P	Field mustard	cytosol	32.86	29.62
Bra026609.1-P	Field mustard	cytosol	33.92	28.74
Bra026605.1-P	Field mustard	cytosol	26.15	28.35
Bra024824.1-P	Field mustard	cytosol	32.86	27.6
Bra026606.1-P	Field mustard	plasma membrane, vacuole	32.51	26.36
Bra019781.1-P	Field mustard	cytosol	25.8	25.44
Bra014456.1-P	Field mustard	cytosol	25.09	24.83
Bra006966.1-P	Field mustard	cytosol	24.38	22.92
Bra029137.1-P	Field mustard	cytosol	23.32	22.76
Bra027000.1-P	Field mustard	cytosol	23.32	22.76
Bra023077.1-P	Field mustard	cytosol	23.32	22.45
Bra027618.1-P	Field mustard	cytosol	22.26	21.72

Protein Annotations

EnsemblPlants:Bra038174.1	EnsemblPlants:Bra038174.1-P	EnsemblPlantsGene:Bra038174	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF15
PFAM:PF14299	PFscan:PS50181	SUPFAM:SSF81383	UniParc:UPI000253E521	UniProt:M4FAQ9	MapMan:35.1

Description

AT1G56250 (E=9e-130) AtPP2-B14 | AtPP2-B14 (Phloem protein 2-B14); carbohydrate binding

Coordinates

chrScaffold000140:+:396082..397117

Molecular Weight (calculated)

31861.1 Da

IEP (calculated)

7.302

GRAVY (calculated)

-0.378

Length

283 amino acids

Sequence
(BLAST)

001: MLPEACIANI ISFTSPADIF SSSAVSLVFR LAGDSDFVWE KFLPSDYKSI ISRSTDHQRS FSSKKEIYRC LCDSLLIDNA RKLFKINKLS GKISYILSAR
101: DISIQSNDQA SYWSWSKVSN SRFLESAELI TTDRLEVNGR IQTGVLSPNT TYGAYLIVKV SKHAYGLDLV PAEICMKSSN GRTVKNKAYL CCLDEKKQQM
201: KRLLYGNREE RMAMTVGMVG GDHEKSREPK GRDDGWMEIE LGEFETREGE DDEVNMSLTE VKGYQLKGGI VIDGIEVRPK SLN

Best Arabidopsis Sequence Match ( AT1G56250.1 )
(BLAST)

001: MMMLPEACIA NILAFTSPAD AFSSSEVSSV FRLAGDSDFV WEKFLPSDYK SLISQSTDHH WNISSKKEIY RCLCDSLLID NARKLFKINK FSGKISYVLS
101: ARDISITHSD HASYWSWSNV SDSRFSESAE LIITDRLEIE GKIQTRVLSA NTRYGAYLIV KVTKGAYGLD LVPAETSIKS KNGQISKSAT YLCCLDEKKQ
201: QMKRLFYGNR EERMAMTVEA VGGDGKRREP KCRDDGWMEI ELGEFETREG EDDEVNMTLT EVKGYQLKGG ILIDGIEVRP KT

Arabidopsis Description

VBFF-box protein VBF [Source:UniProtKB/Swiss-Prot;Acc:Q9C7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.