Factsheet for AT1G56250.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G56240.1	Thale cress	cytosol	90.43	89.79
CDY54100	Canola	cytosol	82.62	82.33
CDY38992	Canola	cytosol	82.27	81.98
Bra038174.1-P	Field mustard	cytosol	82.27	81.98
AT1G09155.1	Thale cress	cytosol	71.63	69.9
VIT_14s0060g02020.t01	Wine grape	cytosol	51.42	50.88
VIT_14s0060g02000.t01	Wine grape	cytosol	51.77	50.69
KRH33867	Soybean	cytosol	44.68	47.73
KRH68480	Soybean	cytosol	46.1	45.3
KRG96762	Soybean	cytosol	46.1	45.3
Solyc01g100010.2.1	Tomato	cytosol	43.62	44.24
PGSC0003DMT400063744	Potato	cytosol	43.97	43.97
Solyc01g100000.2.1	Tomato	cytosol	42.2	43.91
AT5G24560.1	Thale cress	cytosol	26.24	37.95
AT2G02360.1	Thale cress	nucleus	36.17	37.5
AT1G80110.1	Thale cress	cytosol	34.04	37.35
AT2G02350.2	Thale cress	cytosol, mitochondrion	35.46	34.01
AT2G02340.1	Thale cress	cytosol	34.75	32.13
AT2G02240.1	Thale cress	cytosol	36.17	31.88
AT2G02300.1	Thale cress	cytosol	31.91	31.69
AT2G02250.1	Thale cress	cytosol	34.04	30.97
AT2G02230.1	Thale cress	cytosol	35.82	30.06
AT2G02310.1	Thale cress	cytosol	32.62	29.97
AT2G02320.1	Thale cress	mitochondrion	31.91	29.32
AT5G52120.1	Thale cress	cytosol	23.05	22.34
AT3G53000.1	Thale cress	cytosol	23.4	22.0
AT1G63090.1	Thale cress	cytosol	22.34	21.8
AT3G61060.2	Thale cress	cytosol	20.92	20.27
AT1G12710.2	Thale cress	cytosol	22.7	19.22

Protein Annotations

MapMan:35.1	EntrezGene:842078	ProteinID:AAG50907.1	ProteinID:AEE33369.1	EMBL:AK175677	ArrayExpress:AT1G56250
EnsemblPlantsGene:AT1G56250	RefSeq:AT1G56250	TAIR:AT1G56250	RefSeq:AT1G56250-TAIR-G	EnsemblPlants:AT1G56250.1	TAIR:AT1G56250.1
Symbol:AtPP2-B14	EMBL:BT010431	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0030246	InterPro:IPR001810	RefSeq:NP_176021.1	PFAM:PF14299	PO:PO:0000293	PO:PO:0025034
InterPro:PP2-like	PFscan:PS50181	PANTHER:PTHR32278	PANTHER:PTHR32278:SF15	UniProt:Q9C7K0	SUPFAM:SSF81383
UniParc:UPI00000A5699	:	:	:	:	:

Description

VBFF-box protein VBF [Source:UniProtKB/Swiss-Prot;Acc:Q9C7K0]

Coordinates

chr1:-:21061522..21063047

Molecular Weight (calculated)

31841.9 Da

IEP (calculated)

5.804

GRAVY (calculated)

-0.388

Length

282 amino acids

Sequence
(BLAST)

001: MMMLPEACIA NILAFTSPAD AFSSSEVSSV FRLAGDSDFV WEKFLPSDYK SLISQSTDHH WNISSKKEIY RCLCDSLLID NARKLFKINK FSGKISYVLS
101: ARDISITHSD HASYWSWSNV SDSRFSESAE LIITDRLEIE GKIQTRVLSA NTRYGAYLIV KVTKGAYGLD LVPAETSIKS KNGQISKSAT YLCCLDEKKQ
201: QMKRLFYGNR EERMAMTVEA VGGDGKRREP KCRDDGWMEI ELGEFETREG EDDEVNMTLT EVKGYQLKGG ILIDGIEVRP KT

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.