Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G56250.1 | CDY13124 | AT5G44110.1 | 21798944 |
| AT1G56250.1 | CDY36977 | AT5G44110.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038174.1-P | Field mustard | cytosol | 97.88 | 97.88 |
| CDY38992 | Canola | cytosol | 97.53 | 97.53 |
| AT1G56250.1 | Thale cress | cytosol | 82.33 | 82.62 |
| AT1G56240.1 | Thale cress | cytosol | 82.33 | 82.04 |
| CDY31110 | Canola | plastid | 67.84 | 71.11 |
| CDY72024 | Canola | plastid | 67.84 | 70.59 |
| CDY71953 | Canola | cytosol | 65.72 | 66.91 |
| CDX95006 | Canola | cytosol | 65.02 | 66.19 |
| VIT_14s0060g02020.t01 | Wine grape | cytosol | 50.53 | 50.18 |
| VIT_14s0060g02000.t01 | Wine grape | cytosol | 50.88 | 50.0 |
| KRG96762 | Soybean | cytosol | 47.35 | 46.69 |
| KRH33867 | Soybean | cytosol | 43.46 | 46.59 |
| KRH68480 | Soybean | cytosol | 46.29 | 45.64 |
| PGSC0003DMT400063744 | Potato | cytosol | 44.17 | 44.33 |
| Solyc01g100000.2.1 | Tomato | cytosol | 41.7 | 43.54 |
| Solyc01g100010.2.1 | Tomato | cytosol | 42.76 | 43.53 |
| CDY17599 | Canola | cytosol | 38.52 | 38.52 |
| CDY63170 | Canola | cytosol | 31.8 | 36.14 |
| CDY09378 | Canola | cytosol | 33.92 | 35.56 |
| CDX88110 | Canola | cytosol | 15.19 | 35.25 |
| CDY03057 | Canola | cytosol | 29.33 | 35.02 |
| CDX87293 | Canola | cytosol | 31.45 | 34.77 |
| CDY39994 | Canola | cytosol | 31.45 | 34.77 |
| CDY09382 | Canola | cytosol | 32.51 | 34.59 |
| CDY62670 | Canola | cytosol | 3.53 | 34.48 |
| CDY03056 | Canola | cytosol | 19.08 | 34.39 |
| CDY17600 | Canola | cytosol | 34.63 | 34.27 |
| CDY03058 | Canola | cytosol | 34.28 | 33.92 |
| CDY70803 | Canola | cytosol | 31.8 | 33.83 |
| CDY09376 | Canola | cytosol | 22.26 | 32.47 |
| CDY24793 | Canola | cytosol | 16.61 | 32.41 |
| CDY65051 | Canola | cytosol | 25.44 | 31.86 |
| CDY17602 | Canola | cytosol | 34.98 | 31.73 |
| CDY17605 | Canola | cytosol | 32.86 | 31.63 |
| CDY09379 | Canola | cytosol | 27.21 | 31.05 |
| CDY09383 | Canola | cytosol | 33.22 | 30.92 |
| CDY17601 | Canola | cytosol | 32.16 | 30.85 |
| CDY03060 | Canola | cytosol | 34.98 | 30.75 |
| CDY03062 | Canola | cytosol | 34.63 | 30.72 |
| CDY09375 | Canola | cytosol | 31.45 | 30.48 |
| CDY09380 | Canola | cytosol | 32.51 | 29.02 |
| CDY68805 | Canola | cytosol | 17.67 | 28.9 |
| CDY15823 | Canola | cytosol | 33.57 | 28.61 |
| CDX80451 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 21.2 | 27.78 |
| CDY03059 | Canola | cytosol | 32.51 | 27.63 |
| CDX95004 | Canola | peroxisome, plasma membrane, vacuole | 30.39 | 26.63 |
| CDX98047 | Canola | cytosol | 25.44 | 25.09 |
| CDY57080 | Canola | cytosol | 24.73 | 24.82 |
| CDY42484 | Canola | cytosol | 24.38 | 24.21 |
| CDX89095 | Canola | cytosol | 24.03 | 23.78 |
| CDX73584 | Canola | cytosol | 24.03 | 23.45 |
| CDY38901 | Canola | cytosol | 22.97 | 23.38 |
| CDX78140 | Canola | cytosol | 24.38 | 22.92 |
| CDY32595 | Canola | cytosol | 23.32 | 22.84 |
| CDX79690 | Canola | cytosol | 23.67 | 22.79 |
| CDX84551 | Canola | cytosol | 23.32 | 22.45 |
| CDY63226 | Canola | plastid | 22.26 | 21.72 |
| CDY45973 | Canola | cytosol | 22.26 | 21.72 |
| CDY65052 | Canola | cytosol | 31.8 | 20.83 |
| CDY49201 | Canola | cytosol | 21.2 | 20.69 |
| CDY47354 | Canola | cytosol | 21.2 | 20.69 |
| CDY16361 | Canola | extracellular | 12.72 | 18.75 |
Protein Annotations
| EnsemblPlants:CDY54100 | EnsemblPlantsGene:GSBRNA2T00013366001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:PP2-like | PANTHER:PTHR32278 | PANTHER:PTHR32278:SF15 | PFAM:PF14299 | ProteinID:CDY54100 | ProteinID:CDY54100.1 |
| SUPFAM:SSF81383 | UniParc:UPI0004EEC0B6 | UniProt:A0A078ISL6 | MapMan:35.1 | : | : |
Description
BnaA01g35760DBnaA01g35760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISL6]
Coordinates
chrLK033277:+:39689..40724
Molecular Weight (calculated)
31930.2 Da
IEP (calculated)
6.764
GRAVY (calculated)
-0.357
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPEACIANI ISFTSPADIF SSSAVSLVFR LAGDSDFVWE TFLPSDYKSL ISRSTDHQRS FSSKKEIYRC LCDSLLIDNA RKLFKINKLS GKISYILSAR
101: DISIQSNDQA SYWSWSKVSD SRFLESAELI TTDRLEVNGR IQTGVLSPNT RYGAYLIVKV SKHAYGLDLV PAEICMKSSN GRTVKNKAYL CCLDEKKQQM
201: KRLLYGNREE RMAMTVGMVG ADHEKIREPK GRDDGWMEIE LGEFETREGE DDEVNMSLTE VKGYQLKGGI VIDGIEVRPK SLN
101: DISIQSNDQA SYWSWSKVSD SRFLESAELI TTDRLEVNGR IQTGVLSPNT RYGAYLIVKV SKHAYGLDLV PAEICMKSSN GRTVKNKAYL CCLDEKKQQM
201: KRLLYGNREE RMAMTVGMVG ADHEKIREPK GRDDGWMEIE LGEFETREGE DDEVNMSLTE VKGYQLKGGI VIDGIEVRPK SLN
001: MMMLPEACIA NILAFTSPAD AFSSSEVSSV FRLAGDSDFV WEKFLPSDYK SLISQSTDHH WNISSKKEIY RCLCDSLLID NARKLFKINK FSGKISYVLS
101: ARDISITHSD HASYWSWSNV SDSRFSESAE LIITDRLEIE GKIQTRVLSA NTRYGAYLIV KVTKGAYGLD LVPAETSIKS KNGQISKSAT YLCCLDEKKQ
201: QMKRLFYGNR EERMAMTVEA VGGDGKRREP KCRDDGWMEI ELGEFETREG EDDEVNMTLT EVKGYQLKGG ILIDGIEVRP KT
101: ARDISITHSD HASYWSWSNV SDSRFSESAE LIITDRLEIE GKIQTRVLSA NTRYGAYLIV KVTKGAYGLD LVPAETSIKS KNGQISKSAT YLCCLDEKKQ
201: QMKRLFYGNR EERMAMTVEA VGGDGKRREP KCRDDGWMEI ELGEFETREG EDDEVNMTLT EVKGYQLKGG ILIDGIEVRP KT
Arabidopsis Description
VBFF-box protein VBF [Source:UniProtKB/Swiss-Prot;Acc:Q9C7K0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.