Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G02360.1 CDX68112 AT1G75950.1 21798944
AT2G02360.1 CDX73212 AT1G75950.1 21798944
AT2G02360.1 CDX80590 AT1G75950.1 21798944
AT2G02360.1 CDX85931 AT1G75950.1 21798944
AT2G02360.1 CDX87650 AT1G75950.1 21798944
AT2G02360.1 CDY13521 AT1G75950.1 21798944
AT2G02360.1 CDY39073 AT1G75950.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY17599 Canola cytosol 89.03 74.56
AT2G02360.1 Thale cress nucleus 63.71 55.51
CDY09379 Canola cytosol 55.27 52.82
CDY03058 Canola cytosol 61.18 50.7
CDY70803 Canola cytosol 56.54 50.38
CDY17600 Canola cytosol 59.92 49.65
CDY09382 Canola cytosol 55.27 49.25
CDY03056 Canola cytosol 32.07 48.41
CDY65051 Canola cytosol 45.15 47.35
CDY09378 Canola cytosol 53.16 46.67
CDY09375 Canola cytosol 56.96 46.23
AT2G02350.2 Thale cress cytosol, mitochondrion 56.96 45.92
AT2G02340.1 Thale cress cytosol 59.07 45.9
CDY63170 Canola cytosol 45.99 43.78
CDY09380 Canola cytosol 56.96 42.59
AT2G02320.1 Thale cress mitochondrion 53.16 41.04
CDY09383 Canola cytosol 50.63 39.47
CDY17605 Canola cytosol 48.95 39.46
CDY17602 Canola cytosol 51.9 39.42
CDY03060 Canola cytosol 52.32 38.51
CDY17601 Canola cytosol 47.68 38.31
CDX88110 Canola cytosol 19.41 37.7
CDY15823 Canola cytosol 52.74 37.65
VIT_00s0214g00130.t01 Wine grape cytosol 43.46 37.18
CDY03062 Canola cytosol 49.79 36.99
CDY09376 Canola cytosol 29.11 35.57
CDY03059 Canola cytosol 48.95 34.83
Solyc04g050990.2.1 Tomato cytosol 43.46 34.68
PGSC0003DMT400060018 Potato cytosol 45.57 34.5
VIT_00s0214g00060.t01 Wine grape cytosol 41.77 34.49
CDY24793 Canola cytosol 21.1 34.48
Solyc05g055870.2.1 Tomato cytosol 44.73 34.42
PGSC0003DMT400031292 Potato cytosol 43.04 34.34
CDY68805 Canola cytosol 24.89 34.1
KRG92586 Soybean cytosol, plastid 43.46 33.99
VIT_00s0214g00150.t01 Wine grape cytosol 43.04 33.33
CDY39994 Canola cytosol 35.44 32.81
CDX87293 Canola cytosol 35.44 32.81
KRH68844 Soybean cytosol 43.46 32.49
VIT_00s0214g00040.t01 Wine grape cytosol, plastid 46.41 31.52
VIT_00s0214g00090.t01 Wine grape cytosol 44.3 31.16
CDY72024 Canola plastid 35.44 30.88
CDX95006 Canola cytosol 35.87 30.58
CDY65052 Canola cytosol 55.7 30.56
CDY71953 Canola cytosol 35.44 30.22
CDY31110 Canola plastid 34.18 30.0
CDY38992 Canola cytosol 35.02 29.33
CDY54100 Canola cytosol 35.02 29.33
CDY38901 Canola cytosol 28.69 24.46
CDY57080 Canola cytosol 28.69 24.11
CDY32595 Canola cytosol 29.11 23.88
CDX98047 Canola cytosol 28.69 23.69
CDX73584 Canola cytosol 27.43 22.41
CDX78140 Canola cytosol 27.85 21.93
CDY42484 Canola cytosol 26.16 21.75
CDY45973 Canola cytosol 26.58 21.72
CDX79690 Canola cytosol 26.58 21.43
CDY63226 Canola plastid 26.16 21.38
CDX89095 Canola cytosol 25.74 21.33
CDX84551 Canola cytosol 26.16 21.09
CDX80451 Canola cytosol, endoplasmic reticulum, plasma membrane 18.99 20.83
CDY47354 Canola cytosol 25.32 20.69
CDY49201 Canola cytosol 25.32 20.69
CDX95004 Canola peroxisome, plasma membrane, vacuole 27.0 19.81
CDY16361 Canola extracellular 13.5 16.67
CDY62670 Canola cytosol 0.84 6.9
Protein Annotations
Gene3D:1.20.1280.50MapMan:35.1EnsemblPlants:CDY03057ProteinID:CDY03057ProteinID:CDY03057.1InterPro:F-box-like_dom_sf
InterPro:F-box_domGO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00115390001InterPro:IPR001810
PFAM:PF00646PFAM:PF14299InterPro:PP2-likePFscan:PS50181PANTHER:PTHR32278PANTHER:PTHR32278:SF6
SMART:SM00256SUPFAM:SSF81383UniParc:UPI0004EF2F46SEG:seg::
Description
BnaC07g21700D
Coordinates
chrLK031939:+:667967..668840
Molecular Weight (calculated)
26778.5 Da
IEP (calculated)
5.075
GRAVY (calculated)
-0.376
Length
237 amino acids
Sequence
(BLAST)
001: MAKNHGVESS GEGRGKIGSD SSPFDSFPED CISKIVSFTS PREACVAAAV SKAFESAANS DVVWEKFLPP EYESLVPRSR DLSSKKEVYF ALCDEPVLID
101: DGTKSFWLEK ASGKRCIMLS AMNISIIWGD TPQYWEWITI PEARFKRVAE LLNVCWFEIR GRVNTRVLSP RTRYSAYLVF KKADRCYGFD DVAIEAGVGV
201: VGHEASTRTI CFEMDDDDEE ERWDGSTHRR GKMVGWR
Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)
001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN
Arabidopsis Description
PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.