Factsheet for VIT_00s0214g00150.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g00600.t01
VIT_17s0000g06020.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02230.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696
AT2G02300.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT2G02300.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT2G02360.1	VIT_18s0001g14860.t01	AT5G42190.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0214g00130.t01	Wine grape	cytosol	65.36	72.2
VIT_00s0214g00060.t01	Wine grape	cytosol	49.35	52.61
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	59.15	51.86
KRG92586	Soybean	cytosol, plastid	50.0	50.49
VIT_00s0214g00090.t01	Wine grape	cytosol	54.9	49.85
PGSC0003DMT400031292	Potato	cytosol	46.73	48.15
Solyc04g050990.2.1	Tomato	cytosol	46.73	48.15
PGSC0003DMT400060018	Potato	cytosol	48.69	47.6
Solyc05g055870.2.1	Tomato	cytosol	47.71	47.4
AT5G24560.1	Thale cress	cytosol	29.74	46.67
CDY09378	Canola	cytosol	41.18	46.67
VIT_00s0214g00160.t01	Wine grape	cytosol	47.39	46.33
VIT_14s0060g02020.t01	Wine grape	cytosol	42.48	45.61
AT2G02360.1	Thale cress	nucleus	40.52	45.59
CDY24793	Canola	cytosol	21.57	45.52
KRH68844	Soybean	cytosol	46.41	44.8
CDY63170	Canola	cytosol	36.27	44.58
CDY17599	Canola	cytosol	40.52	43.82
VIT_14s0060g02000.t01	Wine grape	cytosol	41.18	43.75
VIT_14s0060g01990.t01	Wine grape	cytosol	39.54	43.68
CDY03057	Canola	cytosol	33.33	43.04
CDY09376	Canola	cytosol	27.12	42.78
CDY03056	Canola	cytosol	21.9	42.68
Bra024822.1-P	Field mustard	cytosol	30.39	42.66
CDX88110	Canola	cytosol	16.99	42.62
CDY17605	Canola	cytosol	40.2	41.84
CDY09382	Canola	cytosol	36.27	41.73
Bra026608.1-P	Field mustard	cytosol	37.58	41.37
CDY70803	Canola	cytosol	35.95	41.35
Bra024825.1-P	Field mustard	cytosol	38.56	41.12
Bra026604.1-P	Field mustard	cytosol	43.14	40.99
Bra024823.1-P	Field mustard	cytosol	38.24	40.91
CDY17600	Canola	cytosol	38.24	40.91
CDY09383	Canola	cytosol	40.52	40.79
CDY17602	Canola	cytosol	41.5	40.71
CDY03058	Canola	cytosol	37.91	40.56
CDY65051	Canola	cytosol	29.74	40.27
Bra026603.1-P	Field mustard	cytosol	38.24	40.21
CDY09375	Canola	cytosol	38.24	40.07
CDY09379	Canola	cytosol	32.03	39.52
CDY17601	Canola	cytosol	37.91	39.32
CDY03060	Canola	cytosol	41.18	39.13
AT2G02350.2	Thale cress	cytosol, mitochondrion	37.58	39.12
AT2G02240.1	Thale cress	cytosol	40.85	39.06
AT2G02230.1	Thale cress	cytosol	42.48	38.69
VIT_05s0051g00080.t01	Wine grape	cytosol	33.33	38.64
CDY03062	Canola	cytosol	40.2	38.56
CDY15823	Canola	cytosol	41.83	38.55
AT2G02250.1	Thale cress	cytosol	38.89	38.39
Bra024827.1-P	Field mustard	cytosol	39.22	38.22
CDY68805	Canola	cytosol	21.57	38.15
Bra026609.1-P	Field mustard	cytosol	41.5	38.02
AT2G02300.1	Thale cress	cytosol	34.64	37.32
AT2G02310.1	Thale cress	cytosol	36.27	36.16
AT2G02340.1	Thale cress	cytosol	35.62	35.74
CDY03059	Canola	cytosol	38.89	35.74
Bra024824.1-P	Field mustard	cytosol	39.22	35.61
CDY09380	Canola	cytosol	36.27	35.02
AT2G02320.1	Thale cress	mitochondrion	34.31	34.2
Bra026605.1-P	Field mustard	cytosol	28.43	33.33
Bra026606.1-P	Field mustard	plasma membrane, vacuole	35.62	31.23
CDX80451	Canola	cytosol, endoplasmic reticulum, plasma membrane	21.24	30.09
CDY65052	Canola	cytosol	35.29	25.0
VIT_16s0100g00520.t01	Wine grape	cytosol	22.22	24.37
VIT_15s0048g01930.t01	Wine grape	cytosol	22.88	24.22
VIT_02s0025g04380.t01	Wine grape	cytosol	22.88	22.65
VIT_08s0007g04190.t01	Wine grape	cytosol	21.9	22.41

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100264334	wikigene:100264334	MapMan:35.1	ProteinID:CCB60978	ProteinID:CCB60978.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6I211	EMBL:FN596523	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	EntrezGene:LOC100264334	wikigene:LOC100264334	PFAM:PF14299	InterPro:PP2-like
PFscan:PS50181	PANTHER:PTHR32278	PANTHER:PTHR32278:SF2	SUPFAM:SSF81383	TIGR:TC64259	UniParc:UPI00015CDAA7
ArrayExpress:VIT_00s0214g00150	EnsemblPlantsGene:VIT_00s0214g00150	EnsemblPlants:VIT_00s0214g00150.t01	unigene:Vvi.9032	RefSeq:XP_002270549	RefSeq:XP_002270549.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:13410895..13412629

Molecular Weight (calculated)

34211.9 Da

IEP (calculated)

5.088

GRAVY (calculated)

-0.133

Length

306 amino acids

Sequence
(BLAST)

001: MESESTVQAT SSNFTVGIEF SALPEGCIAG ILAWTSPRDV CRMSAVSLEF LSAAESDALW ETFLPADYRE IIGLSSESSS HLSISSKKEV FFRLCNSPLL
101: IDGGKKSLWL DKKSGKKCYM LAARDLTITW SDTPMYWTWI SLPHSRFIEV ANLNQVCWLE IKGKINTGML SSMTNYVVFL VFQRNDRFYG LKNVPVESSV
201: GMIGGVTTKR VIYLDAPQVE SSNHPDHDFG ERFLQYENVI SSMTGNPDPA SLKKRIDGWY EVELGEFFSG EGKGKELEIS VMEVKSGNWK SGLLIEGIEI
301: RPKFCS

Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)

001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN

Arabidopsis Description

PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.