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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • plastid 2
  • golgi 1
  • mitochondrion 4
  • cytosol 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion
Any Predictor:cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:golgi
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_00s0181g00080.t01
VIT_00s0214g00040.t01
VIT_00s0214g00060.t01
VIT_00s0214g00090.t01
VIT_00s0214g00130.t01
VIT_00s0214g00150.t01
VIT_00s1522g00010.t01
VIT_01s0010g02380.t01
VIT_01s0010g03630.t01
VIT_01s0010g03730.t01
VIT_01s0011g01220.t01
VIT_01s0011g05490.t01
VIT_01s0011g05810.t01
VIT_01s0026g02080.t01
VIT_02s0025g01650.t01
VIT_02s0025g04380.t01
VIT_02s0087g00790.t01
VIT_03s0038g02890.t01
VIT_03s0038g02910.t01
VIT_03s0038g03630.t01
VIT_03s0088g00330.t01
VIT_04s0008g02380.t01
VIT_04s0008g05470.t01
VIT_05s0077g00570.t01
VIT_05s0094g01540.t01
VIT_05s0094g01590.t01
VIT_05s0102g01140.t01
VIT_05s0102g01150.t01
VIT_07s0005g00340.t01
VIT_07s0031g01580.t01
VIT_07s0104g01320.t01
VIT_07s0129g01110.t01
VIT_10s0003g03880.t01
VIT_10s0003g04300.t01
VIT_10s0071g00310.t01
VIT_11s0037g00430.t01
VIT_12s0055g00460.t01
VIT_12s0057g00720.t01
VIT_12s0059g01650.t01
VIT_13s0019g03380.t01
VIT_14s0128g00770.t01
VIT_16s0050g01810.t01
VIT_16s0100g00520.t01
VIT_18s0001g02630.t01
VIT_18s0001g05310.t01
VIT_18s0001g09700.t01
VIT_18s0001g15010.t01
VIT_18s0041g01090.t01
VIT_18s0041g01100.t01
VIT_18s0076g00350.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G42190.1 VIT_05s0102g01140.t01 AT1G06110.1 12169662
AT5G42190.1 VIT_05s0102g01150.t01 AT1G06110.1 12169662
AT5G42190.1 VIT_05s0102g01140.t01 AT1G06110.1 12795696
AT5G42190.1 VIT_05s0102g01150.t01 AT1G06110.1 12795696
AT5G42190.1 VIT_01s0026g02080.t01 AT1G14330.1 21798944
AT5G42190.1 VIT_18s0001g15010.t01 AT1G21410.1 21798944
AT5G42190.1 VIT_18s0001g02630.t01 AT1G21760.1 12169662
AT5G42190.1 VIT_18s0001g02630.t01 AT1G21760.1 12795696
AT5G42190.1 VIT_03s0088g00330.t01 AT1G23780.1 12795696
AT5G42190.1 VIT_12s0055g00460.t01 AT1G25280.1 12795696
AT5G42190.1 VIT_01s0026g02080.t01 AT1G26930.1 21798944
AT5G42190.1 VIT_01s0010g03730.t01 AT1G27340.1 12795696
AT5G42190.1 VIT_01s0011g01220.t01 AT1G30950.1 10607296
AT5G42190.1 VIT_01s0011g01220.t01 AT1G30950.1 12169662
AT5G42190.1 VIT_01s0011g01220.t01 AT1G30950.1 12795696
AT5G42190.1 VIT_14s0128g00770.t01 AT1G55000.1 12169662
AT5G42190.1 VIT_14s0128g00770.t01 AT1G55000.1 21798944
AT5G42190.1 VIT_02s0025g04380.t01 AT1G63090.1 12795696
AT5G42190.1 VIT_01s0010g03630.t01 AT1G67340.1 12169662
AT5G42190.1 VIT_01s0011g05810.t01 AT1G68050.1 14749489
AT5G42190.1 VIT_01s0011g05810.t01 AT1G68050.1 15310821
AT5G42190.1 VIT_01s0011g05810.t01 AT1G68050.1 21798944
AT5G42190.1 VIT_18s0076g00350.t01 AT1G76920.1 12169662
AT5G42190.1 VIT_18s0076g00350.t01 AT1G76920.1 12795696
AT5G42190.1 VIT_18s0001g05310.t01 AT1G78100.1 12169662
AT5G42190.1 VIT_01s0011g05490.t01 AT2G01620.1 12795696
AT5G42190.1 VIT_00s0214g00040.t01 AT2G02230.1 12795696
AT5G42190.1 VIT_00s0214g00060.t01 AT2G02230.1 12795696
AT5G42190.1 VIT_00s0214g00090.t01 AT2G02230.1 12795696
AT5G42190.1 VIT_00s0214g00130.t01 AT2G02230.1 12795696
AT5G42190.1 VIT_00s0214g00150.t01 AT2G02230.1 12795696
AT5G42190.1 VIT_00s0214g00040.t01 AT2G02300.1 21798944
AT5G42190.1 VIT_00s0214g00060.t01 AT2G02300.1 21798944
AT5G42190.1 VIT_00s0214g00090.t01 AT2G02300.1 21798944
AT5G42190.1 VIT_00s0214g00130.t01 AT2G02300.1 21798944
AT5G42190.1 VIT_00s0214g00150.t01 AT2G02300.1 21798944
AT5G42190.1 VIT_00s0214g00040.t01 AT2G02360.1 14749489
AT5G42190.1 VIT_00s0214g00060.t01 AT2G02360.1 14749489
AT5G42190.1 VIT_00s0214g00090.t01 AT2G02360.1 14749489
AT5G42190.1 VIT_00s0214g00130.t01 AT2G02360.1 14749489
AT5G42190.1 VIT_00s0214g00150.t01 AT2G02360.1 14749489
AT5G42190.1 VIT_00s0214g00040.t01 AT2G02360.1 21798944
AT5G42190.1 VIT_00s0214g00060.t01 AT2G02360.1 21798944
AT5G42190.1 VIT_00s0214g00090.t01 AT2G02360.1 21798944
AT5G42190.1 VIT_00s0214g00130.t01 AT2G02360.1 21798944
AT5G42190.1 VIT_00s0214g00150.t01 AT2G02360.1 21798944
AT5G42190.1 VIT_01s0026g02080.t01 AT2G02870.1 12795696
AT5G42190.1 VIT_01s0026g02080.t01 AT2G02870.1 21798944
AT5G42190.1 VIT_12s0059g01650.t01 AT2G04550.1 12795696
AT5G42190.1 VIT_03s0038g02890.t01 AT2G17030.1 12795696
AT5G42190.1 VIT_03s0038g02910.t01 AT2G17030.1 12795696
AT5G42190.1 VIT_03s0038g03630.t01 AT2G17030.1 12795696
AT5G42190.1 VIT_07s0031g01580.t01 AT2G21950.1 12795696
AT5G42190.1 VIT_04s0008g02380.t01 AT2G24540.1 12795696
AT5G42190.1 VIT_04s0008g05470.t01 AT2G25490.1 12169662
AT5G42190.1 VIT_04s0008g05470.t01 AT2G25490.1 14675533
AT5G42190.1 VIT_04s0008g05470.t01 AT2G25490.1 14749489
AT5G42190.1 VIT_04s0008g05470.t01 AT2G25490.1 21798944
AT5G42190.1 VIT_13s0019g03380.t01 AT2G39940.1 12172031
AT5G42190.1 VIT_13s0019g03380.t01 AT2G39940.1 12445118
AT5G42190.1 VIT_13s0019g03380.t01 AT2G39940.1 14749489
AT5G42190.1 VIT_05s0094g01540.t01 AT2G44090.1 21798944
AT5G42190.1 VIT_05s0094g01590.t01 AT2G44130.1 21798944
AT5G42190.1 VIT_18s0041g01090.t01 AT3G23880.1 21798944
AT5G42190.1 VIT_18s0041g01100.t01 AT3G23880.1 21798944
AT5G42190.1 VIT_01s0010g02380.t01 AT3G26000.1 12795696
AT5G42190.1 VIT_05s0094g01590.t01 AT3G59940.1 12795696
AT5G42190.1 VIT_07s0104g01320.t01 AT3G62980.1 10398681
AT5G42190.1 VIT_07s0104g01320.t01 AT3G62980.1 12795696
AT5G42190.1 VIT_07s0005g00340.t01 AT4G02440.1 12795696
AT5G42190.1 VIT_07s0005g00340.t01 AT4G02440.1 16412087
AT5G42190.1 VIT_10s0003g04300.t01 AT4G05460.1 12795696
AT5G42190.1 VIT_02s0025g01650.t01 AT4G10930.1 12795696
AT5G42190.1 VIT_00s0181g00080.t01 AT4G21510.1 12795696
AT5G42190.1 VIT_18s0001g09700.t01 AT4G24210.1 15161962
AT5G42190.1 VIT_18s0001g09700.t01 AT4G24210.1 21798944
AT5G42190.1 VIT_10s0071g00310.t01 AT5G23340.1 21798944
AT5G42190.1 VIT_04s0008g05470.t01 AT5G25350.1 14675533
AT5G42190.1 VIT_02s0087g00790.t01 AT5G45360.1 12795696
AT5G42190.1 VIT_10s0003g03880.t01 AT5G46170.1 21798944
AT5G42190.1 VIT_12s0057g00720.t01 AT5G48170.1 15161962
AT5G42190.1 VIT_05s0077g00570.t01 AT5G49610.1 14749489
AT5G42190.1 VIT_01s0010g03630.t01 AT5G50450.1 21798944
AT5G42190.1 VIT_16s0100g00520.t01 AT5G52120.1 12795696
AT5G42190.1 VIT_16s0100g00520.t01 AT5G52120.1 21798944
AT5G42190.1 VIT_16s0050g01810.t01 AT5G52880.1 21798944
AT5G42190.1 VIT_11s0037g00430.t01 AT5G57900.1 12795696
AT5G42190.1 VIT_00s1522g00010.t01 AT5G65495.1 21798944
AT5G42190.1 VIT_07s0129g01110.t01 AT5G67250.1 12169662
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_03s0038g02500.t01 Wine grape cytosol 69.04 87.74
AT5G42190.1 Thale cress cytosol 69.54 80.12
VIT_03s0038g02490.t01 Wine grape mitochondrion 51.27 66.89
VIT_19s0085g00180.t01 Wine grape cytosol 40.61 52.63
VIT_15s0045g00490.t01 Wine grape cytosol 38.58 50.33
VIT_10s0003g05820.t01 Wine grape cytosol 39.09 47.53
VIT_19s0085g00190.t01 Wine grape cytosol 37.06 46.5
VIT_03s0038g02480.t01 Wine grape cytosol 64.97 29.22
VIT_00s0349g00030.t01 Wine grape cytosol 41.12 3.18
Protein Annotations
EntrezGene:100252349wikigene:100252349MapMan:19.2.2.8.1.1Gene3D:3.30.710.10EMBL:AM453226ProteinID:CAN76662
ProteinID:CAN76662.1ProteinID:CCB46068ProteinID:CCB46068.1UniProt:F6GZT1EMBL:FN595227GO:GO:0000003
GO:GO:0006511GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009790
GO:GO:0009791GO:GO:0009793GO:GO:0009987GO:GO:0019538EntrezGene:LOC100252349wikigene:LOC100252349
PFAM:PF01466PFAM:PF03931PIRSF:PIRSF028729PANTHER:PTHR11165PANTHER:PTHR11165:SF88InterPro:SKP1
InterPro:SKP1-likeInterPro:SKP1-like_dim_sfInterPro:SKP1/BTB/POZ_sfSMART:SM00512SUPFAM:SSF54695SUPFAM:SSF81382
InterPro:Skp1_comp_POZInterPro:Skp1_comp_dimerTIGR:TC55431UniParc:UPI000210A349ArrayExpress:VIT_18s0001g14860EnsemblPlantsGene:VIT_18s0001g14860
EnsemblPlants:VIT_18s0001g14860.t01RefSeq:XP_002270061RefSeq:XP_002270061.1SEG:seg::
Description
No Description!
Coordinates
chr18:+:12900823..12904890
Molecular Weight (calculated)
22524.9 Da
IEP (calculated)
4.708
GRAVY (calculated)
-0.416
Length
197 amino acids
Sequence
(BLAST)
001: MQPTVLGVIR RLRGDNHTFL FFPYLTSLRN LGLGFRLQER IMSSSRKITL KSSDGEAFDV DEAVALESQT IKHMIEDDCA DNGIPLPNVT SKILSKVIEY
101: CKKHVEAPKP EERSGVDEEL KAWDADFVKV DQATLFDLIL AANYLNIKSL LDLTCQTVAD MIKGKTPEEI RKTFNIKNDF TPEEEEEVRR ENQWAFE
Best Arabidopsis Sequence Match ( AT5G42190.1 )
(BLAST)
001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
Arabidopsis Description
SKP1BSKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.